Job Description P25889 Confidence 97.58% Date Thu Jan 5 11:42:42 GMT 2012 Rank 209 Aligned Residues 274 % Identity 13% Template c1xuzA_ PDB info PDB header:biosynthetic protein Chain: A: PDB Molecule:polysialic acid capsule biosynthesis protein siac; PDBTitle: crystal structure analysis of sialic acid synthase (neub)from2 neisseria meningitidis, bound to mn2+, phosphoenolpyruvate, and n-3 acetyl mannosaminitol Resolution 2.20 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.				.	.	.	.	20	.	.	.							.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure															.	.	.									.	.	.	.	.	.
Query SS confidence															.	.	.									.	.	.	.	.	.
Query Sequence		T	K	D	L	S	I	T	F	C	G	V	K	F	.	.	.	P	N	P	F	C	L	S	S	.	.	.	.	.	.	S	P	V	G	N	C	Y	E	M	C	A	K	A	Y	D	T	G	W	G	G	V	V	F	K	T	I	G	F	F	I	A	N	E	V	S	P	R	F	D	H	L	V	K	E	D	T	G	F	I	G
Query Conservation															.	.	.									.	.	.	.	.	.
Alig confidence															.	.	.									.	.	.	.	.	.
Template Conservation
Template Sequence		Q	N	N	N	E	F	K	I	G	N	R	S	V	G	Y	N	H	E	P	L	I	I	C	E	I	G	I	N	H	E	G	S	L	K	T	A	F	E	M	V	D	A	A	Y	N	A	G	A	E	V	V	K	H	Q	T	H	I	V	E	D	E	M	S	D	E	A	K	Q	V	I	P	G	N	A	D	V	S	I	Y	E
Template Known Secondary structure										T	T					T	T	S										T	T	T	T	T																T		S															G	G	G	G	G				T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	K	N	M	E	Q	I	A	E	H	P	L	E	E	N	L	A	A	L	R	R	L	K	E	D	Y	P	D	K	V	L	I	A	S	I	M	G	E	N	E	Q	Q	W	E	E	L	A	R	L	V	Q	E	A	G	A	D	M	I	E	C	N	F	S	C	P	Q	M	T	S	H	A	M	G	S	D	V	G	Q	S	P
Query Conservation
Alig confidence																								.	.	.	.	.											.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.											.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	M	E	R	C	A	L	N	E	E	D	E	I	K	L	K	E	Y	V	E	S	K	.	.	.	.	.	G	M	I	F	I	S	T	P	F	S	.	.	.	.	.	.	R	A	A	A	L	R	L	Q	R	M	D	I	P	A	Y	K	.	.	.	.	.	.	.	.	.	.	.	.	I	G	S	G	E	C	N	N	Y
Template Known Secondary structure																							T	.	.	.	.	.	T									S	.	.	.	.	.	.											T		S				.	.	.	.	.	.	.	.	.	.	.	.			G	G	G	T	T
Template Predicted Secondary structure																								.	.	.	.	.											.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.						.	.	.	.	.	.	110	.	.	.							.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.													130	.	.	.	.	.	.	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.		.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure																									.																								.
Query SS confidence																									.																								.
Query Sequence		E	L	V	E	K	Y	C	R	A	V	K	R	G	S	T	L	P	M	L	A	K	M	T	.	P	N	I	G	D	M	C	E	V	A	L	A	A	K	R	G	G	A	D	G	I	A	A	.	I	N	T	V	K	S	I	T	N	I	D	L	N	Q	K	I	G	M	P	I	V	N	G	K	S	S	I	S	G	Y	S	G
Query Conservation																									.																								.
Alig confidence										.	.	.	.	.											.																								.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	L	I	K	L	V	A	S	.	.	.	.	.	F	G	K	P	I	I	L	S	T	G	M	N	S	I	E	S	I	K	K	S	V	E	I	I	R	E	A	G	V	P	Y	A	L	L	H	C	T	N	I	Y	P	T	P	Y	E	D	V	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure									T	.	.	.	.	.	T		S							T	T																	T												S	S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure										.	.	.	.	.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		139	140	.	.	.	.	.	.						.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.			.	.	290	.	.	.	.	.	.		.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																										.	.										.
Query SS confidence																																																										.	.										.
Query Sequence		K	A	V	K	P	I	A	L	R	F	I	Q	Q	M	R	T	H	P	E	L	R	D	F	P	I	S	G	I	G	G	I	E	T	W	E	D	A	A	E	F	L	L	L	G	A	A	T	L	Q	V	T	T	G	I	M	Q	.	.	Y	G	Y	R	I	V	E	D	M	.	A	S	G	L	S	H	Y	L	A	D	Q	G
Query Conservation																																																										.	.										.
Alig confidence		.	.	.	.	.	.	.												.	.																																					.	.										.												.
Template Conservation		.	.	.	.	.	.	.												.	.																																																												.
Template Sequence		.	.	.	.	.	.	.	L	G	G	M	N	D	L	S	E	A	F	.	.	P	D	A	I	I	G	L	S	D	H	T	L	D	N	Y	A	C	L	G	A	V	A	L	G	G	S	I	L	E	R	H	F	T	D	R	M	D	R	P	G	P	D	I	V	C	S	M	N	P	D	T	F	K	E	L	K	Q	G	A	.
Template Known Secondary structure		.	.	.	.	.	.	.	T	T										.	.	T	T	S								S	S	S	S										T								B		S		T	T			S	T	T	G	G	G		B													.
Template Predicted Secondary structure		.	.	.	.	.	.	.												.	.																																																												.
Template SS confidence
									195	.	.	.	.	200	.	.	.	.	.			.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	D	S	L	Q	E	M	V	G	L	A	N	N	N	I	V	P	A	E	D	L	D	R	S	Y	I
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	H	A	L	K	L	A	R	G	G	K	K	D	T	I	I	A	G	E	K	P	T	K	D	F	A
Template Known Secondary structure		.							S	S			T	T				G	G	G
Template Predicted Secondary structure		.
Template SS confidence
			265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions