Job Description P25889 Confidence 99.97% Date Thu Jan 5 11:42:42 GMT 2012 Rank 20 Aligned Residues 292 % Identity 17% Template c1kbiB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome b2; PDBTitle: crystallographic study of the recombinant flavin-binding domain of2 baker's yeast flavocytochrome b2: comparison with the intact wild-3 type enzyme Resolution 2.30 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.								.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.		.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.																				.
Query SS confidence																								.	.	.	.	.	.	.																				.
Query Sequence		T	K	D	L	S	I	T	F	C	G	V	K	F	P	N	P	F	C	L	S	S	S	.	.	.	.	.	.	.	P	V	G	N	C	Y	E	M	C	A	K	A	Y	D	T	G	W	G	G	.	V	V	F	K	T	I	G	F	F	I	A	N	E	V	S	P	R	F	D	H	L	V	K	E	D	T	G	F	I	G	F
Query Conservation																								.	.	.	.	.	.	.																				.
Alig confidence																								.	.	.	.	.	.	.																				.														.	.	.	.
Template Conservation																																																																.	.	.	.
Template Sequence		K	V	D	I	S	T	D	M	L	G	S	H	V	D	V	P	F	Y	V	S	A	T	A	L	C	K	L	G	N	P	L	E	G	E	K	D	V	A	R	G	C	G	Q	G	V	T	K	V	P	Q	M	I	S	T	L	A	S	C	S	P	E	E	.	.	.	.	I	I	E	A	A	P	S	D	K	Q	I	Q	W	Y
Template Known Secondary structure		S		B						T	T				S	S	S							S		G	G	G	T	S	T	T	T	T										S	S	S	S								T	T		S	S					.	.	.	.						S		S	S
Template Predicted Secondary structure																																																																.	.	.	.
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.					.	.	240	.	.	.	.	.	.	.	.	.	250	.
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	N	M	E	Q	I	A	E	H	P	L	E	E	N	L	A	A	L	R	R	L	K	E	D	Y	P	D	K	V	L	I	A	S	I	M	G	E	N	E	Q	Q	W	E	E	L	A	R	L	V	Q	E	A	G	A	D	M	I	E	C	N	F	S	C	P	Q	M	T	S	H	A	M	G	S	D	V	G	Q	S	P	E
Query Conservation
Alig confidence																																														.	.	.	.	.	.	.	.																							.	.
Template Conservation																																														.	.	.	.	.	.	.	.																							.	.
Template Sequence		Q	L	Y	V	N	S	D	R	K	I	T	D	D	L	V	K	N	V	E	K	L	G	V	K	A	L	F	V	T	V	D	A	P	S	L	G	Q	R	E	K	D	M	K	L	.	.	.	.	.	.	.	.	K	F	S	N	T	K	T	N	V	E	E	S	Q	G	A	S	R	A	L	S	K	F	.	.	I	D	P	S
Template Known Secondary structure							S	S															T									S		S	S											.	.	.	.	.	.	.	.			T	T				S		S	S		S	G	G	G	G	G			S	S	.	.	S		T	T
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.																							.	.
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.									.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.			.	.	320	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	E	K	Y	C	R	A	V	K	R	G	S	T	L	P	M	L	A	K	M	T	P	N	I	G	D	M	C	E	V	A	L	A	A	K	R	G	G	A	D	G	I	A	A	I	N	T	V	K	S	I	T	N	I	D	L	N	Q	K	I	G	M	P	I	V	N	G	K	S	S	I	S	G	Y	S	G	K	A	V
Query Conservation
Alig confidence																													.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																													.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	T	W	K	D	I	E	E	L	K	K	K	T	K	L	P	I	V	I	K	G	V	Q	R	T	E	D	.	.	.	.	V	I	K	A	A	E	I	G	V	S	G	V	V	L	S	N	H	G	G	R	Q	L	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	S	R	A	P	I	E	V
Template Known Secondary structure													T			S									S				.	.	.	.							T	T		S							T	T	T	T	S	S	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure																													.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.					.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.																			380	.	.	.	.	.	.	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.					.	.	290					.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure																																																							.	.	.	.				.	.	.	.
Query SS confidence																																																							.	.	.	.				.	.	.	.
Query Sequence		K	P	I	A	L	R	F	I	Q	Q	M	R	T	H	P	E	L	R	D	F	P	I	S	G	I	G	G	I	E	T	W	E	D	A	A	E	F	L	L	L	G	A	A	T	L	Q	V	T	T	G	I	M	Q	.	.	.	.	Y	G	Y	.	.	.	.	R	I	V	E	D	M	A	S	G	L	S	H	Y	L	A	D
Query Conservation																																																							.	.	.	.				.	.	.	.
Alig confidence																.	.	.																																					.	.	.	.				.	.	.	.
Template Conservation																.	.	.
Template Sequence		L	A	E	T	M	P	I	L	E	Q	R	N	L	K	.	.	.	D	K	L	E	V	F	V	D	G	G	V	R	R	G	T	D	V	L	K	A	L	C	L	G	A	K	G	V	G	L	G	R	P	F	L	Y	A	N	S	C	Y	G	R	N	G	V	E	K	A	I	E	I	L	R	D	E	I	E	M	S	M	R	L
Template Known Secondary structure											T	T	T	G	G	.	.	.	G	T	S						S	S			S											T		S
Template Predicted Secondary structure																.	.	.
Template SS confidence
		388	.	390	.	.	.	.	.	.	.	.	.	400	.				.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	G	F	D	S	L	Q	E	M	V	G	L	A	N	N	N	I	V	P	A	E	D	L	D	R	S	Y	I	V	Y	P
Query Conservation
Alig confidence												.	.	.	.
Template Conservation												.	.	.	.
Template Sequence		L	G	V	T	S	I	A	E	L	K	.	.	.	.	P	D	L	L	D	L	S	T	L	K	A	R	T	V	G	V	P
Template Known Secondary structure			T			B	G	G	G			.	.	.	.	G	G	G				T	T	T	T
Template Predicted Secondary structure												.	.	.	.
Template SS confidence
		465	.	.	.	.	470	.	.	.	.					.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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