Job Description P25889 Confidence 99.77% Date Thu Jan 5 11:42:42 GMT 2012 Rank 56 Aligned Residues 256 % Identity 13% Template c1djnB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:trimethylamine dehydrogenase; PDBTitle: structural and biochemical characterization of recombinant wild type2 trimethylamine dehydrogenase from methylophilus methylotrophus (sp.3 w3a1) Resolution 2.20 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.								30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																								.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.
Query Sequence		I	T	F	C	G	V	K	F	P	N	P	F	C	L	S	S	S	P	V	G	N	C	.	.	.	.	.	.	.	Y	E	M	C	A	K	A	Y	D	T	G	W	G	G	V	V	F	K	T	I	G	F	F	I	A	N	E	V	S	P	R	F	D	H	L	V	K	E	D	T	G	F	I	G	F	K	N	M	E	Q	I
Query Conservation																								.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	Q	I	G	P	K	T	L	R	N	R	F	Y	Q	V	P	H	C	I	G	A	G	S	D	K	P	G	F	Q	S	A	H	R	S	V	K	A	E	G	G	W	A	A	L	N	T	E	Y	C	S	I	N	P	E	S	D	D	T	H	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	S	A	R	I	W
Template Known Secondary structure					T	T				S	S	S									S		T	T	T															T	T		S									S	S	T	T	S			T	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.						S
Template Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.															.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.																											110	.	.														.	.	.	.	.	.	.	120	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	E	H	P	L	E	E	N	L	A	A	L	R	R	L	K	E	D	Y	P	D	K	V	L	I	A	S	I	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	E	N	.	.	.	.	.	.	.	.	.	.	.	.	.	E	Q	Q	W	E	E	L	A	R
Query Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.
Template Sequence		D	E	G	D	V	R	N	L	K	A	M	T	D	E	V	H	K	Y	.	.	G	A	L	A	G	V	E	L	W	Y	G	G	A	H	A	P	N	M	E	S	R	A	T	P	R	G	P	S	Q	Y	A	S	E	F	E	T	L	S	Y	C	K	E	M	D	L	S	D	I	A	Q	V	Q	Q	F	Y	V	D	A	A	K
Template Known Secondary structure		S																	T	.	.	T											G	G	G	S			T	T	T							S	S			B		S	S	S	T	T		B
Template Predicted Secondary structure																				.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.			.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.										.	.	.	140	.	.	.	.			.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.			.	170	.	.	.	.	.	.										.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.									.	.																									.	.									.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.									.	.																									.	.									.	.	.	.	.	.	.	.	.
Query Sequence		L	V	Q	E	A	G	A	D	M	I	E	C	N	F	S	.	.	.	.	.	.	.	.	.	C	P	Q	M	T	S	H	A	.	.	M	G	S	D	V	G	Q	S	P	E	L	V	E	K	Y	C	R	A	V	K	R	G	S	T	.	.	L	P	M	L	A	K	M	T	.	.	.	.	.	.	.	.	.	P	N	I
Query Conservation																	.	.	.	.	.	.	.	.	.									.	.																									.	.									.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.									.	.																									.	.									.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	S	R	D	A	G	F	D	I	V	Y	V	Y	G	A	H	S	Y	L	P	L	Q	F	L	N	P	Y	Y	N	K	R	T	D	K	Y	G	G	S	L	E	N	R	A	R	F	W	L	E	T	L	E	K	V	K	H	A	V	G	S	D	C	A	I	A	T	R	F	G	V	D	T	V	Y	G	P	G	Q	I	E	A
Template Known Secondary structure						T	T		S								T	T									T	T	T					S	T	T	S	S	S																				T	T	T	S											S	S		T	T	S			T
Template Predicted Secondary structure
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	D	M	C	E	V	A	L	A	A	K	R	G	G	A	D	G	I	A	A	I	N	T	V	K	S	I	T	N	I	D	L	N	Q	K	I	G	M	P	I	V	N	G	K	S	S	I	S	G	Y	S	G	K	A	V	K	P	I	A	L	R	F	I	Q	Q	M	R	T	H	P	E	L	R	D	F	P	I	S	G	I
Query Conservation
Alig confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.
Template Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.
Template Sequence		E	V	D	G	Q	K	F	V	E	M	A	D	S	L	V	D	M	W	D	I	T	I	G	D	I	A	E	W	G	E	D	A	G	P	S	R	F	Y	Q	Q	G	H	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	P	W	V	K	L	V	K	Q	V	.	.	.	S	K	K	P	V	L	G	V
Template Known Secondary structure		T	T										T	T	T		S							S		S	T	T	G	G	G	T	S			T	T	T			T	T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									T	T	.	.	.		S	S
Template Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.																	280	.	.	.	.	.	.	.	.	.				290	.	.	.	.	.	.	.
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.		.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.
Query SS confidence																		.
Query Sequence		G	G	I	E	T	W	E	D	A	A	E	F	L	L	L	G	.	A	A	T	L	Q	V	T	T	G	I	M	Q	Y	G	Y	R	I	V	E	D	M	A	S	G
Query Conservation																		.
Alig confidence																		.													.
Template Conservation																															.
Template Sequence		G	R	Y	T	D	P	E	K	M	I	E	I	V	T	K	G	Y	A	D	I	I	G	C	A	R	P	S	I	A	.	D	P	F	L	P	Q	K	V	E	Q	G
Template Known Secondary structure		S														T	T	S		S	B				S						.		T	T							T	T
Template Predicted Secondary structure																															.
Template SS confidence
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.		.	.	.	330	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions