 |
Job Description | P25889 | Confidence | 98.92% | Date | Thu Jan 5 11:42:42 GMT 2012 |
Rank | 127 | Aligned Residues | 86 |
% Identity | 21% | Template | c1c4cA_ |
PDB info |
PDB header:oxidoreductase | Chain: A: PDB Molecule:protein (fe-only hydrogenase); |
PDBTitle: binding of exogenously added carbon monoxide at the active2 site of the fe-only hydrogenase (cpi) from clostridium3 pasteurianum
|
Resolution | 2.40 Å |
|
 |
  |   |
309 | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | |
. | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | |
|
340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | |
|
|
|
. | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | |
|
|
|
|
. | . | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|  |  |  |
|
|
|
|
|
|
|  |  |
|
|
| . | . | . | . |
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  | . | . | . | . | . |  |  |
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
Query Sequence |   |
F | D | S | L | Q | E | M | V | G | L | A | N | N | N | . |
I | V | P | A | E | D | L | D | R | S | Y | I | V | Y | P | R | I | . |
. |
N | L | D | K | C | V | G | C | G | R | C | Y | I | S | C | Y | . |
. |
. |
. |
D | G | G | H | Q | A | M | E | W | S | E | K | T | R | T | P | . |
. |
. |
. |
. |
H | C | N | T | E |
Query Conservation |   |
  |   |   |   |   |   |   |   |
|   |   |   |   |   | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
| . | . |   |   |   |   |
|   |   |
|
|   |
|   |   |   |
|
| . | . | . | . |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   | . | . | . | . | . |   |
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
Template Conservation |   |
|
|   |   |
|   |   |   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |   |
|   |   |
|
|
|   |
|   |
|
|
|
|   |
|   |
|   |   |
|   |   |
|
|   |   |   |   |
|
|   |   |   |   |
|   |   |   |   |   |   |   |
|   |   |   |
Template Sequence |   |
F | L | K | L | V | I | K | Y | K | A | R | A | S | K | P | F | L | P | K | D | K | T | E | Y | V | D | E | R | S | K | S | L | T | V | D | R | T | K | C | L | L | C | G | R | C | V | N | A | C | G | K | N | T | E | T | Y | A | M | K | F | L | N | K | N | G | K | T | I | I | G | A | E | D | E | K | C | F | D | D | T |
Template Known Secondary structure |   |
S | S |  |  |  |  |  |  | T |
|
|
| S | S |
|
|
|
| S |
|
| G | G | G |  |  |
|
| S | S | S |  |  |  |  | T | T | S |
|
|
|
|
|  |  |  |  |  |  |  |  |  | T | S |
|
|
| S |  |  |  |  |  | T | T |  |  |  |  |  | S | G | G | G |
|
| G | G | G | S |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |
|
|
|
|
|
|
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
109 | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . |
  |
  |   |
377 | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . |
Predicted Secondary structure |   |
 |
|
|
|
|
|
|
|  |  |  |
|
|
|
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | C | V | G | C | L | L | C | G | H | V | C | P | V | G | C | I | E |
Query Conservation |   |
  |
|   |
|
|
|
|
|   |   |   |
|
|   |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |   |
|
|   |
|   |   |   |
|
|   |
|
|
|   |
Template Sequence |   |
N | C | L | L | C | G | Q | C | I | I | A | C | P | V | A | A | L | S |
Template Known Secondary structure |   |
S |
|
|
|
|
|  |  |  |  |  |
| S | S | S | S |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |
|
|
|  |  |
|
|
|
|
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
189 | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|