Email l.a.kelley@imperial.ac.uk Description Q47684 Date Thu Jan 5 12:37:00 GMT 2012 Unique Job ID 674259a6ba3baa9d

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2ea9a1 100.0 83 Fold:Profilin-like Superfamily:YeeU-like Family:YagB/YeeU/YfjZ-like 2 d2h28a1 100.0 61 Fold:Profilin-like Superfamily:YeeU-like Family:YagB/YeeU/YfjZ-like 3 d2inwa1 100.0 63 Fold:Profilin-like Superfamily:YeeU-like Family:YagB/YeeU/YfjZ-like 4 d1ryba_ 56.8 23 Fold:Phosphorylase/hydrolase-like Superfamily:Peptidyl-tRNA hydrolase-like Family:Peptidyl-tRNA hydrolase-like 5 c2z2jA_ 47.6 14 PDB header:hydrolase Chain: A: PDB Molecule:peptidyl-trna hydrolase; PDBTitle: crystal structure of peptidyl-trna hydrolase from mycobacterium2 tuberculosis 6 c3h3yF_ 47.5 33 PDB header:viral protein Chain: F: PDB Molecule:baseplate structural protein gp6; PDBTitle: fitting of the gp6 crystal structure into 3d cryo-em2 reconstruction of bacteriophage t4 star-shaped baseplate 7 c3v2iA_ 31.5 10 PDB header:hydrolase Chain: A: PDB Molecule:peptidyl-trna hydrolase; PDBTitle: structure of a peptidyl-trna hydrolase (pth) from burkholderia2 thailandensis 8 c3neaA_ 30.2 10 PDB header:hydrolase Chain: A: PDB Molecule:peptidyl-trna hydrolase; PDBTitle: crystal structure of peptidyl-trna hydrolase from francisella2 tularensis 9 d2ptha_ 29.4 28 Fold:Phosphorylase/hydrolase-like Superfamily:Peptidyl-tRNA hydrolase-like Family:Peptidyl-tRNA hydrolase-like 10 d2e7ga1 25.2 17 Fold:Alpha-lytic protease prodomain-like Superfamily:Ribosome-binding factor A, RbfA Family:Ribosome-binding factor A, RbfA 11 c2yqkA_ 21.8 9 PDB header:transcription/apoptosis Chain: A: PDB Molecule:arginine-glutamic acid dipeptide repeats protein; PDBTitle: solution structure of the sant domain in arginine-glutamic2 acid dipeptide (re) repeats 12 d1du0a_ 18.6 29 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 13 d2qdya1 17.6 24 Fold:Nitrile hydratase alpha chain Superfamily:Nitrile hydratase alpha chain Family:Nitrile hydratase alpha chain 14 d1xv2a_ 17.1 23 Fold:AF0104/ALDC/Ptd012-like Superfamily:AF0104/ALDC/Ptd012-like Family:Alpha-acetolactate decarboxylase-like 15 d1lpba2 15.8 71 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Colipase-like Family:Colipase-like 16 d1mh3a1 15.1 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 17 d1le8a_ 14.8 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 18 d1s7ea1 14.7 31 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 19 c3aqoD_ 14.2 32 PDB header:membrane protein Chain: D: PDB Molecule:probable secdf protein-export membrane protein; PDBTitle: structure and function of a membrane component secdf that enhances2 protein export 20 d1p7jb_ 14.0 29 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 21 d1e3oc1 not modelled 12.7 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 22 d1au7a1 not modelled 11.4 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 23 c3hruA_ not modelled 11.2 22 PDB header:transcription Chain: A: PDB Molecule:metalloregulator scar; PDBTitle: crystal structure of scar with bound zn2+ 24 c3a03A_ not modelled 11.0 31 PDB header:gene regulation Chain: A: PDB Molecule:t-cell leukemia homeobox protein 2; PDBTitle: crystal structure of hox11l1 homeodomain 25 c1n8sC_ not modelled 10.9 43 PDB header:hydrolase Chain: C: PDB Molecule:colipase ii; PDBTitle: structure of the pancreatic lipase-colipase complex 26 d2d81a1 not modelled 10.2 19 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:PHB depolymerase-like 27 d1g3wa2 not modelled 9.9 14 Fold:Iron-dependent repressor protein, dimerization domain Superfamily:Iron-dependent repressor protein, dimerization domain Family:Iron-dependent repressor protein, dimerization domain 28 d1p7ia_ not modelled 9.8 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 29 d1f43a_ not modelled 9.7 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 30 d1sana_ not modelled 9.6 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 31 d1yz8p1 not modelled 9.6 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 32 d2hrkb1 not modelled 9.5 15 Fold:GST C-terminal domain-like Superfamily:GST C-terminal domain-like Family:Arc1p N-terminal domain-like 33 c1a31A_ not modelled 9.5 27 PDB header:isomerase/dna Chain: A: PDB Molecule:protein (topoisomerase i); PDBTitle: human reconstituted dna topoisomerase i in covalent complex2 with a 22 base pair dna duplex 34 d1ftza_ not modelled 9.3 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 35 d1lfba_ not modelled 9.2 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 36 c2lcgA_ not modelled 9.0 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of protein rmet_5065 from ralstonia2 metallidurans, northeast structural genomics consortium target crr115 37 d1ocpa_ not modelled 8.9 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 38 d9anta_ not modelled 8.9 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 39 d1jgga_ not modelled 8.8 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 40 d1wh5a_ not modelled 8.7 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 41 c3fhkF_ not modelled 8.7 22 PDB header:structural genomics, unknown function Chain: F: PDB Molecule:upf0403 protein yphp; PDBTitle: crystal structure of apc1446, b.subtilis yphp disulfide2 isomerase 42 d2hddb_ not modelled 8.6 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 43 c2jobA_ not modelled 8.6 3 PDB header:lipid binding protein Chain: A: PDB Molecule:antilipopolysaccharide factor; PDBTitle: solution structure of an antilipopolysaccharide factor from2 shrimp and its possible lipid a binding site 44 d1gyxa_ not modelled 8.6 10 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:4-oxalocrotonate tautomerase-like 45 c2dmqA_ not modelled 8.6 19 PDB header:dna binding protein Chain: A: PDB Molecule:lim/homeobox protein lhx9; PDBTitle: solution structure of the homeobox domain of lim/homeobox2 protein lhx9 46 d2craa1 not modelled 8.5 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 47 d1qcva_ not modelled 8.4 50 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 48 d6rxna_ not modelled 8.3 67 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 49 d1fjla_ not modelled 8.1 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 50 c2da1A_ not modelled 8.1 25 PDB header:transcription Chain: A: PDB Molecule:alpha-fetoprotein enhancer binding protein; PDBTitle: solution structure of the first homeobox domain of at-2 binding transcription factor 1 (atbf1) 51 c2l9rA_ not modelled 8.1 19 PDB header:transcription Chain: A: PDB Molecule:homeobox protein nkx-3.1; PDBTitle: solution nmr structure of homeobox domain of homeobox protein nkx-3.12 from homo sapiens, northeast structural genomics consortium target3 hr6470a 52 d2dsxa1 not modelled 8.0 67 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 53 c2kp6A_ not modelled 7.9 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of protein cv0237 from2 chromobacterium violaceum. northeast structural genomics3 consortium (nesg) target cvt1 54 c2dmuA_ not modelled 7.8 25 PDB header:dna binding protein Chain: A: PDB Molecule:homeobox protein goosecoid; PDBTitle: solution structure of the homeobox domain of homeobox2 protein goosecoid 55 d2rdva_ not modelled 7.7 67 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 56 c2da4A_ not modelled 7.7 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein dkfzp686k21156; PDBTitle: solution structure of the homeobox domain of the2 hypothetical protein, dkfzp686k21156 57 d1bcoa1 not modelled 7.7 35 Fold:mu transposase, C-terminal domain Superfamily:mu transposase, C-terminal domain Family:mu transposase, C-terminal domain 58 d2obba1 not modelled 7.6 28 Fold:HAD-like Superfamily:HAD-like Family:BT0820-like 59 d1h7va_ not modelled 7.6 67 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 60 d1zl8a1 not modelled 7.6 25 Fold:L27 domain Superfamily:L27 domain Family:L27 domain 61 d1ijwc_ not modelled 7.5 26 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Recombinase DNA-binding domain 62 d1brfa_ not modelled 7.5 67 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 63 d1x93a1 not modelled 7.5 50 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:CopG-like 64 c1x93B_ not modelled 7.5 50 PDB header:transcription Chain: B: PDB Molecule:hypothetical protein hp0222; PDBTitle: nmr structure of helicobacter pylori hp0222 65 d1b8ia_ not modelled 7.4 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 66 d1rb9a_ not modelled 7.3 67 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 67 d1iu5a_ not modelled 7.3 67 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 68 d1s24a_ not modelled 7.2 50 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 69 c1s24A_ not modelled 7.2 50 PDB header:electron transport Chain: A: PDB Molecule:rubredoxin 2; PDBTitle: rubredoxin domain ii from pseudomonas oleovorans 70 d1iroa_ not modelled 7.1 67 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 71 c2djnA_ not modelled 7.1 19 PDB header:transcription Chain: A: PDB Molecule:homeobox protein dlx-5; PDBTitle: the solution structure of the homeobox domain of human2 homeobox protein dlx-5 72 d1b72a_ not modelled 6.9 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 73 c2v3bB_ not modelled 6.8 50 PDB header:oxidoreductase Chain: B: PDB Molecule:rubredoxin 2; PDBTitle: crystal structure of the electron transfer complex2 rubredoxin - rubredoxin reductase from pseudomonas3 aeruginosa. 74 d4rxna_ not modelled 6.8 67 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 75 d1dx8a_ not modelled 6.8 67 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 76 d1gvda_ not modelled 6.7 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Myb/SANT domain 77 d1ztra1 not modelled 6.6 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 78 c2dmsA_ not modelled 6.6 19 PDB header:dna binding protein Chain: A: PDB Molecule:homeobox protein otx2; PDBTitle: solution structure of the homeobox domain of homeobox2 protein otx2 79 d2o5ha1 not modelled 6.6 21 Fold:NMB0513-like Superfamily:NMB0513-like Family:NMB0513-like 80 c2ypnA_ not modelled 6.5 19 PDB header:transferase Chain: A: PDB Molecule:protein (hydroxymethylbilane synthase); PDBTitle: hydroxymethylbilane synthase 81 d1hcra_ not modelled 6.5 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Recombinase DNA-binding domain 82 d1qasa3 not modelled 6.4 83 Fold:TIM beta/alpha-barrel Superfamily:PLC-like phosphodiesterases Family:Mammalian PLC 83 c1s7eA_ not modelled 6.4 31 PDB header:transcription Chain: A: PDB Molecule:hepatocyte nuclear factor 6; PDBTitle: solution structure of hnf-6 84 d1vnda_ not modelled 6.4 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 85 c3eq1A_ not modelled 6.3 24 PDB header:transferase Chain: A: PDB Molecule:porphobilinogen deaminase; PDBTitle: the crystal structure of human porphobilinogen deaminase at2 2.8a resolution 86 d1y74a1 not modelled 6.3 25 Fold:L27 domain Superfamily:L27 domain Family:L27 domain 87 d1eexa_ not modelled 6.3 47 Fold:TIM beta/alpha-barrel Superfamily:Cobalamin (vitamin B12)-dependent enzymes Family:Diol dehydratase, alpha subunit 88 d1p91a_ not modelled 6.3 19 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:rRNA methyltransferase RlmA 89 c2da2A_ not modelled 6.2 31 PDB header:transcription Chain: A: PDB Molecule:alpha-fetoprotein enhancer binding protein; PDBTitle: solution structure of the second homeobox domain of at-2 binding transcription factor 1 (atbf1) 90 c2dmtA_ not modelled 6.2 19 PDB header:dna binding protein Chain: A: PDB Molecule:homeobox protein barh-like 1; PDBTitle: solution structure of the homeobox domain of homeobox2 protein barh-like 1 91 d1hdpa_ not modelled 6.1 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 92 d1q8la_ not modelled 6.1 14 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 93 d2zkmx4 not modelled 6.0 26 Fold:TIM beta/alpha-barrel Superfamily:PLC-like phosphodiesterases Family:Mammalian PLC 94 c3a01A_ not modelled 5.9 25 PDB header:gene regulation/dna Chain: A: PDB Molecule:homeodomain-containing protein; PDBTitle: crystal structure of aristaless and clawless homeodomains bound to dna 95 c2hfpB_ not modelled 5.8 83 PDB header:transcription Chain: B: PDB Molecule:src peptide fragment; PDBTitle: crystal structure of ppar gamma with n-sulfonyl-2-indole2 carboxamide ligands 96 c1fm6E_ not modelled 5.8 83 PDB header:transcription Chain: E: PDB Molecule:steroid receptor coactivator; PDBTitle: the 2.1 angstrom resolution crystal structure of the2 heterodimer of the human rxralpha and ppargamma ligand3 binding domains respectively bound with 9-cis retinoic4 acid and rosiglitazone and co-activator peptides. 97 c1fm9E_ not modelled 5.8 83 PDB header:transcription Chain: E: PDB Molecule:steroid receptor coactivator; PDBTitle: the 2.1 angstrom resolution crystal structure of the2 heterodimer of the human rxralpha and ppargamma ligand3 binding domains respectively bound with 9-cis retinoic4 acid and gi262570 and co-activator peptides. 98 c1k74E_ not modelled 5.8 83 PDB header:transcription Chain: E: PDB Molecule:steroid receptor coactivator; PDBTitle: the 2.3 angstrom resolution crystal structure of the2 heterodimer of the human ppargamma and rxralpha ligand3 binding domains respectively bound with gw409544 and 9-cis4 retinoic acid and co-activator peptides. 99 c3kmgE_ not modelled 5.7 83 PDB header:transcription Chain: E: PDB Molecule:steroid receptor coactivator-1; PDBTitle: the x-ray crystal structure of ppar-gamma in complex with an indole2 derivative modulator, gsk538, and an src-1 peptide