Job Description P42914 Confidence 94.64% Date Thu Jan 5 12:02:13 GMT 2012 Rank 23 Aligned Residues 88 % Identity 14% Template c1z9oB_ PDB info PDB header:protein binding/lipid binding protein Chain: B: PDB Molecule:vesicle-associated membrane protein-associated protein a; PDBTitle: 1.9 angstrom crystal structure of the rat vap-a msp homology domain in2 complex with the rat orp1 ffat motif Resolution 1.90 Å

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		26	.	.	.	30		.	.	.	.	.	.	.				.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure							.								.	.	.
Query SS confidence							.								.	.	.
Query Sequence		I	V	L	Q	R	.	T	R	V	I	Y	D	A	.	.	.	S	R	K	E	A	A	L	P	V	A	N	K	G	A	E	T	P	Y	L	L	Q	S	W	V	D	N	I	D	G	K	S	R	A	P	F	I	I	T	P	P	L	F	R	L	E	A	G	D	D	S	S	L	R	I	I	K	T	A	D	N	L	P	E	N
Query Conservation							.								.	.	.
Alig confidence							.								.	.	.														.															.	.	.	.	.
Template Conservation																															.															.	.	.	.	.
Template Sequence		L	V	L	D	P	P	S	D	L	K	F	K	G	P	F	T	D	V	V	T	T	N	L	K	L	Q	N	P	S	.	D	R	K	V	C	F	K	V	K	T	T	A	P	R	.	.	.	.	.	R	Y	C	V	R	P	N	S	G	V	I	D	P	G	S	I	V	T	V	S	V	M	L	Q	P	F	D	Y	D	P	N
Template Known Secondary structure		S				S	S	S						S			S	S												S	.	S	S									S		G	G	.	.	.	.	.	G					S	S						T	T																T	T
Template Predicted Secondary structure																															.															.	.	.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50						.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	E	S	L	F	Y	I	N	V	R	A	I	P	A	K	K	K	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	K	S	K	H	K	F	M	V	Q	T	I	F	A	P	P	S	D
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions