Job Description P0AD17 Confidence 19.02% Date Wed Jan 25 15:20:24 GMT 2012 Rank 2 Aligned Residues 158 % Identity 10% Template c3ddlB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:xanthorhodopsin; PDBTitle: crystallographic structure of xanthorhodopsin, a light-2 driven ion pump with dual chromophore Resolution 1.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	R	E	N	E	T	I	S	H	H	Y	T	H	H	V	L	L	M	A	A	I	P	V	I	C	A	F	I	G	T	T	Q	I	G	W	N	F	G	D	G	T	I	L	K	L	S	W	F	T	G	L	A	L	A	V	L	F	Y	G	V	M	L	A	G	V	A	V	M	G	R	V	I	W	W	M	A	R	N	Y	P
Query Conservation
Alig confidence																																																			.																														.
Template Conservation																																																			.																														.
Template Sequence		R	N	N	V	A	P	K	Y	R	I	S	M	M	V	S	A	L	V	V	F	I	A	G	Y	H	Y	F	R	I	T	S	S	W	E	A	A	Y	A	L	Q	N	G	M	Y	Q	P	T	G	E	.	L	F	N	D	A	Y	R	Y	V	D	W	L	L	T	V	P	L	L	T	V	E	L	V	L	V	M	G	L	P	.
Template Known Secondary structure		G	G	G	S		G	G	G																												T					S	S	S					S		.																										S				.
Template Predicted Secondary structure																																																			.																														.
Template SS confidence
		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.		.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.								.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure																														.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.
Query Sequence		Q	R	P	S	L	A	H	C	M	V	F	A	G	Y	V	A	T	P	L	F	L	S	G	L	V	A	L	Y	.	.	.	.	.	.	.	P	L	V	W	L	C	A	L	V	G	T	V	A	L	F	Y	T	G	Y	L	L	Y	L	G	I	P	S	F	L	N	I	N	K	E	E	G	L	S	F	S	S	S	T	L	A
Query Conservation																														.	.	.	.	.	.	.
Alig confidence		.																												.	.	.	.	.	.	.
Template Conservation		.
Template Sequence		.	K	N	E	R	G	P	L	A	A	K	L	G	F	L	A	A	L	M	I	V	L	G	Y	P	G	E	V	S	E	N	A	A	L	F	G	T	R	G	L	W	G	F	L	S	T	I	P	F	V	W	I	L	Y	I	L	F	T	Q	L	G	D	T	I	Q	R	Q	S	S	R	V	S	T	L	L	G	N	A	R	L
Template Known Secondary structure		.																											T		S				S	S	S																						T	T	T						T	S
Template Predicted Secondary structure		.
Template SS confidence
			116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
		172	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	V	L	V	L	E	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	L	L	A	T	W	G	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		195	.	.	.	.	200	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions