Job Description P0AD17 Confidence 5.93% Date Wed Jan 25 15:20:24 GMT 2012 Rank 13 Aligned Residues 151 % Identity 6% Template c2jagA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:halorhodopsin; PDBTitle: l1-intermediate of halorhodopsin t203v Resolution 1.93 Å

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		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	R	E	N	E	T	I	S	H	H	Y	T	H	H	V	L	L	M	A	A	I	P	V	I	C	A	F	I	G	T	T	Q	I	G	W	N	F	G	D	G	T	I	L	K	L	S	W	F	T	G	L	A	L	A	V	L	F	Y	G	V	M	L	A	G	V	A	V	M	G	R	V	I	W	W	M	A	R	N	Y	P
Query Conservation
Alig confidence																																																																													.	.	.	.	.
Template Conservation																																																																													.	.	.	.	.
Template Sequence		R	T	I	R	P	G	R	P	R	L	I	W	G	A	T	L	M	I	P	L	V	S	I	S	S	Y	L	G	L	L	S	G	L	T	V	G	M	I	E	M	P	A	G	H	A	L	A	G	E	M	V	R	S	Q	W	G	R	Y	L	T	W	A	L	S	T	P	M	I	L	L	A	L	G	L	L	.	.	.	.	.
Template Known Secondary structure		T	T			T	T																										T	T	T								T	T	S	T	T	T	T																												.	.	.	.	.
Template Predicted Secondary structure																																																																													.	.	.	.	.
Template SS confidence
		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.					.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure																																.	.	.	.
Query SS confidence																																.	.	.	.
Query Sequence		Q	R	P	S	L	A	H	C	M	V	F	A	G	Y	V	A	T	P	L	F	L	S	G	L	V	A	L	Y	P	L	.	.	.	.	V	W	L	C	A	L	V	G	T	V	A	L	F	Y	T	G	Y	L	L	Y	L	G	I	P	S	F	L	N	I	N	K	E	E	G	L	S	F	S	S	S	T	L	A	I	G	V
Query Conservation																																.	.	.	.
Alig confidence																																.	.	.	.
Template Conservation
Template Sequence		A	D	V	D	L	G	S	L	F	T	V	I	A	A	D	I	G	M	C	V	T	G	L	A	A	A	M	T	T	S	A	L	L	F	R	W	A	F	Y	A	I	S	C	A	F	F	V	V	V	L	S	A	L	V	T	D	W	A	A	S	A	S	S	A	G	T	A	E	I	F	D	T	L	R	V	L	V	V	V	L
Template Known Secondary structure		T	T																												S																									T									T	T
Template Predicted Secondary structure
Template SS confidence
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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