|   |
3 | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | |
|
|
|
|
. | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | |
|
|
Predicted Secondary structure |   |
|  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
| . | . | . | . | . |
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  | . | . | . |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
Query Sequence |   |
E | K | Y | I | V | T | W | D | M | L | Q | I | H | A | R | K | L | A | S | R | L | M | P | S | E | Q | W | K | G | I | I | A | V | S | R | G | G | L | V | P | G | A | L | L | A | R | E | L | G | I | R | . |
. |
. |
. |
. |
H | V | D | T | V | C | I | S | S | Y | D | H | D | N | Q | R | E | L | K | V | L | . |
. |
. |
Query Conservation |   |
  |
|   |   |
|
|   |   |   |
|   |   |   |
|   |   |
|
|   |   |
|   |   |   |   |   |   |
|   |
|
|
|
|   |   |
|
|   |   |   |
|   |   |
|
|   |   |
|   |   |   | . | . | . | . | . |   |   |   |   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   | . | . | . |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
Template Conservation |   |
|
|   |   |
|
|   |   |
|
|   |   |   |
|   |   |
|
|   |   |
| . |   |   |   |   |
|
|   |
|
|
|
|   |
|
|
|   |
|   |
|   |   |
|   |   |   |
|   |   |   |   |   |   |   |
|   |
|   |   |
|   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
D | K | Q | Y | I | S | Y | N | N | V | H | Q | L | C | Q | V | S | A | E | R | I | . |
K | N | F | K | P | D | L | I | I | A | I | G | G | G | G | F | I | P | A | R | I | L | R | T | F | L | K | E | P | G | V | P | T | I | R | I | F | A | I | I | L | S | L | Y | E | D | V | K | V | S | R | T | Q | W | I | D | Y | E |
Template Known Secondary structure |   |
|  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |
|
| S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| T | T | S |
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
5 | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | |
. | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . |
  |
  |   |
|
75 | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | 110 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
120 | . |
Predicted Secondary structure |   |
. |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |
|
|
|  |  |  |  |  |  |
|
|
|
| . | . | . | . | . | . | . | . | . | . |
|
|
Query SS confidence |   |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
Query Sequence |   |
. |
K | R | A | E | G | D | G | E | G | F | I | V | I | D | D | L | V | D | T | G | G | T | A | V | A | I | R | E | M | Y | P | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
K | A | H | F | V | T | I | F | A | K | P | A | G | R | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
P | L |
Query Conservation |   |
. |   |   |   |   |   |   |
|
|   |
|
|
|
|
|
|
|
|
|
|
|   |
|
|   |   |
|   |
|   |
|   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |
|   |
|   |   |
|   |   |   |   | . | . | . | . | . | . | . | . | . | . |   |   |
Alig confidence |   |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |
|
|
Template Conservation |   |
  |   |   |   |   |
|   |
|
|   |
|
|
|
|
|
|
|   |
|
|
|   |
|
|   |   |
|   |   |   |
|   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|   |   |
|   |   |   |   |   |   |   |
|
|   |   |   |   |   |   |   |
Template Sequence |   |
Q | C | K | L | D | L | V | G | K | N | V | L | I | V | D | E | V | D | D | T | R | T | T | L | H | Y | A | L | S | E | L | E | K | D | A | A | E | Q | A | K | A | K | G | I | D | T | E | K | S | P | E | M | K | T | N | F | G | I | F | V | L | H | D | K | Q | K | P | K | K | A | D | L | P | A | E | M | L | N | D | K |
Template Known Secondary structure |   |
 |  | T |
|
|
| T | T |
|  |  |  |  |  |
| S |  |  | S | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
| T | T | T |
| G | G | G | S |
|  |  |  |  |  |  |  |  |  |  |  | S |
|
| S | S |
|
|
|  |  |  |  |  |
| T |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
96 | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . |
  |
  |   |
122 | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | D | D | Y | V | V | D | I | P | Q | D | T | W | I | E | Q | P | W | D | M |
Query Conservation |   |
|
|   |   |   |   |   |   |   |   |
|   |
|
|
|
|
|
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|
|   |   |   |   |   |   |
|   |
|
|
|
|
|
|
|   |
Template Sequence |   |
N | R | Y | F | A | A | K | T | V | P | D | K | W | Y | A | Y | P | W | E | S |
Template Known Secondary structure |   |
T | T |  |  |  |  |  |  |  |  | S |
|  |  |  |
| G | G | G |
|
Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
176 | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . |
  |