Job Description Q46948 Confidence 100.00% Date Thu Jan 5 12:36:06 GMT 2012 Rank 11 Aligned Residues 170 % Identity 25% Template c3uk7B_ PDB info PDB header:transferase Chain: B: PDB Molecule:class i glutamine amidotransferase-like domain-containing PDBTitle: crystal structure of arabidopsis thaliana dj-1d Resolution 2.05 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.														.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	A	S	A	L	V	C	L	A	P	G	S	E	E	T	E	A	V	T	T	I	D	L	L	V	R	G	G	I	K	V	T	T	A	S	V	A	S	D	G	N	L	.	.	.	.	.	.	.	.	.	.	.	.	.	A	I	T	C	S	R	G	V	K	L	L	A	D	A	P	L	V	E	V	A	D	G	E	Y	D
Query Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	R	T	V	L	I	L	C	G	D	Y	X	E	D	Y	E	V	X	V	P	F	Q	A	L	Q	A	F	G	I	T	V	H	T	V	C	P	G	K	K	A	G	D	S	C	P	T	A	V	H	D	F	C	G	H	Q	T	Y	F	E	S	R	G	H	N	F	T	L	N	A	T	F	D	E	V	D	L	S	K	Y	D
Template Known Secondary structure											T	T																T	T								T	T			T	T											S	S	S	S	S													S		G	G	G			G	G	G		S
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		V	I	V	L	P	G	G	I	K	G	A	E	C	F	R	D	S	T	L	L	V	E	T	V	K	Q	F	H	R	S	G	R	I	V	A	A	I	C	A	A	P	A	T	V	L	V	P	H	D	I	F	P	I	G	N	M	T	G	F	P	T	L	K	D	K	I	P	A	E	Q	W	L	D	K	R	V	V	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence									.																											.							.																																				.	.	.
Template Conservation									.																											.							.
Template Sequence		G	L	V	I	P	G	G	.	R	A	P	E	Y	L	A	L	T	A	S	V	V	E	L	V	K	E	F	S	R	S	G	K	P	I	.	A	S	I	H	G	Q	.	L	I	L	A	A	A	D	T	V	N	G	R	K	C	T	A	Y	A	T	V	G	P	S	L	V	A	A	G	A	K	W	V	E	P	I	T	P	D
Template Known Secondary structure								B	.	T						T	T														T	T				.					T		.							T			T	T							G	G	G							T	T							S	S	T	T
Template Predicted Secondary structure									.																											.							.
Template SS confidence
		84	.	.	.	.	.	90		.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.		.	.	.	120	.	.		.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
			146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	W	D	A	R	V	K	L	L	T	S	Q	G	P	G	T	A	I	D	F	G	L	K	I	I	D	L	L	V	G
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		V	C	V	V	D	G	S	L	I	T	A	A	T	Y	E	G	H	P	E	F	I	Q	L	F	V	K	A	L	G	G
Template Known Secondary structure							T	T					S	S	G	G	G												T	T
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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