Job Description Q46948 Confidence 100.00% Date Thu Jan 5 12:36:06 GMT 2012 Rank 15 Aligned Residues 177 % Identity 12% Template c3er6D_ PDB info PDB header:structural genomics, unknown function Chain: D: PDB Molecule:putative transcriptional regulator protein; PDBTitle: crystal structure of a putative transcriptional regulator2 protein from vibrio parahaemolyticus Resolution 1.90 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.								.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.
Query Sequence		S	A	L	V	C	L	A	P	G	S	E	E	T	E	A	V	T	T	I	D	L	L	V	R	G	.	.	.	.	.	.	.	G	I	K	V	T	T	A	S	V	A	S	D	G	N	L	A	I	T	C	S	R	G	V	K	L	L	A	D	A	P	L	V	E	V	A	D	G	E	Y	D	V	I	V	L	P	G	G	I
Query Conservation																											.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.													.	.	.
Template Conservation																																														.	.	.
Template Sequence		R	V	V	A	L	A	P	T	G	R	Y	F	A	S	I	I	S	S	L	E	I	L	E	T	A	A	E	F	A	E	F	Q	G	F	M	T	H	V	V	T	P	N	N	R	.	.	.	P	L	I	G	R	G	G	I	S	V	Q	P	T	A	Q	W	Q	S	F	D	F	T	N	I	L	I	I	G	S	I	G	D	P
Template Known Secondary structure										T	T	S																		T	T											T	T	S		.	.	.					T	T	S						S	S		G	G	G		S			S								S
Template Predicted Secondary structure																																														.	.	.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.				.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.				140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure																																																																	.	.	.
Query SS confidence																																																																	.	.	.
Query Sequence		K	G	A	E	C	F	R	D	S	T	L	L	V	E	T	V	K	Q	F	H	R	S	G	R	I	V	A	A	I	C	A	A	P	A	T	V	L	V	P	H	D	I	F	P	I	G	N	M	T	G	F	P	T	L	K	D	K	I	P	A	E	Q	W	.	.	.	L	D	K	R	V	V	W	D	A	R	V	K	L	L
Query Conservation																																																																	.	.	.
Alig confidence		.																														.																																	.	.	.
Template Conservation		.																														.
Template Sequence		.	L	E	S	L	D	K	I	D	P	A	L	F	D	W	I	R	E	L	H	L	K	G	S	K	I	V	A	I	D	.	T	G	I	F	V	V	A	K	A	G	L	L	Q	Q	N	K	A	V	M	H	S	Y	F	A	H	L	F	G	E	L	F	P	E	I	M	L	M	T	E	Q	K	A	L	I	D	G	N	V	Y
Template Known Secondary structure		.				G	G	G	S														T	T							T	.	T									T			T	T																		T	T	S				T	T		S					T	T
Template Predicted Secondary structure		.																														.
Template SS confidence
			87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.		.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	S	Q	G	P	G	T	A	I	D	F	G	L	K	I	I	D	L	L	V	G	R	E	K	A	H	E	V	A	S	Q	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	S	S	G	P	Y	S	H	S	S	V	M	L	E	I	V	E	E	Y	F	G	K	H	T	R	N	L	G	N	Q	F	L
Template Known Secondary structure						S	S																										T
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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