Secondary structure and disorder prediction |   |
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1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 |
Sequence |   |
M | N | T | N | K | L | S | L | R | R | N | V | I | Y | L | A | V | V | Q | G | S | N | Y | L | L | P | L | L | T | F | P | Y | L | V | R | T | L | G | P | E | N | F | G | I | F | G | F | C | Q | A | T | M | L | Y | M | I | M | F | V | E |
Secondary structure |   |
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SS confidence |   |
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Disorder |   |
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Disorder confidence |   |
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  |   |
. | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 |
Sequence |   |
Y | G | F | N | L | T | A | T | Q | S | I | A | K | A | A | D | S | K | D | K | V | T | S | I | F | W | A | V | I | F | S | K | I | V | L | I | V | I | T | L | I | F | L | T | S | M | T | L | L | V | P | E | Y | N | K | H | A | V | I | I |
Secondary structure |   |
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SS confidence |   |
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Disorder |   |
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Disorder confidence |   |
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  |   |
. | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 |
Sequence |   |
W | S | F | V | P | A | L | V | G | N | L | I | Y | P | I | W | L | F | Q | G | K | E | K | M | K | W | L | T | L | S | S | I | L | S | R | L | A | I | I | P | L | T | F | I | F | V | N | T | K | S | D | I | A | I | A | G | F | I | Q | S |
Secondary structure |   |
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SS confidence |   |
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Disorder |   |
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Disorder confidence |   |
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. | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 |
Sequence |   |
S | A | N | L | V | A | G | I | I | A | L | A | I | V | V | H | E | G | W | I | G | K | V | T | L | S | L | H | N | V | R | R | S | L | A | D | G | F | H | V | F | I | S | T | S | A | I | S | L | Y | S | T | G | I | V | I | I | L | G | F |
Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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SS confidence |   |
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Disorder |   |
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Disorder confidence |   |
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  |   |
. | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 |
Sequence |   |
I | S | G | P | T | S | V | G | N | F | N | A | A | N | T | I | R | N | A | L | Q | G | L | L | N | P | I | T | Q | A | I | Y | P | R | I | S | S | T | L | V | L | N | R | V | K | G | V | I | L | I | K | K | S | L | T | C | L | S | L | I |
Secondary structure |   |
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SS confidence |   |
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Disorder |   |
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Disorder confidence |   |
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  |   |
. | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 |
Sequence |   |
G | G | A | F | S | L | I | L | L | L | G | A | S | I | L | V | K | I | S | I | G | P | G | Y | D | N | A | V | I | V | L | M | I | I | S | P | L | P | F | L | I | S | L | S | N | V | Y | G | I | Q | V | M | L | T | H | N | Y | K | K | E |
Secondary structure |   |
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SS confidence |   |
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Disorder |   |
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Disorder confidence |   |
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. | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . |
Sequence |   |
F | S | K | I | L | I | A | A | G | L | L | S | L | L | L | I | F | P | L | T | T | L | F | K | E | I | G | A | A | I | T | L | L | A | T | E | C | L | V | T | S | L | M | L | M | F | V | R | N | N | K | L | L | V | C |
Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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SS confidence |   |
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Disorder |   |
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Disorder confidence |   |
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  |
Confidence Key |
High(9) |   |
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Low (0) |
? | Disordered |
  | Alpha helix |
  | Beta strand |
Hover over an aligned region to see model and summary info
Please note, only up to the top 20 hits are modelled to reduce computer load
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1 |
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PDB 3mku chain A
Region: 2 - 411 Aligned: 406 Modelled: 406 Confidence: 100.0% Identity: 13% PDB header:transport protein Chain: A: PDB Molecule:multi antimicrobial extrusion protein (na(+)/drug
PDBTitle: structure of a cation-bound multidrug and toxin compound extrusion2 (mate) transporter
Phyre2
2 |
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PDB 2iub chain A domain 2
Region: 357 - 411 Aligned: 50 Modelled: 55 Confidence: 19.0% Identity: 18% Fold: Transmembrane helix hairpin Superfamily: Magnesium transport protein CorA, transmembrane region Family: Magnesium transport protein CorA, transmembrane region
Phyre2
3 |
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PDB 1pv7 chain A
Region: 4 - 411 Aligned: 394 Modelled: 394 Confidence: 15.5% Identity: 8% Fold: MFS general substrate transporter Superfamily: MFS general substrate transporter Family: LacY-like proton/sugar symporter
Phyre2
4 |
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PDB 1b9u chain A
Region: 391 - 410 Aligned: 20 Modelled: 20 Confidence: 8.2% Identity: 10% PDB header:hydrolase Chain: A: PDB Molecule:protein (atp synthase);
PDBTitle: membrane domain of the subunit b of the e.coli atp synthase
Phyre2
5 |
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PDB 2xq2 chain A
Region: 1 - 249 Aligned: 247 Modelled: 249 Confidence: 7.2% Identity: 9% PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter;
PDBTitle: structure of the k294a mutant of vsglt
Phyre2
|
Detailed template information |   |
Binding site prediction |   |
Due to computational demand, binding site predictions are not run for batch jobs
If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
If you use the binding site
predictions from 3DLigandSite, please also cite: |
3DLigandSite: predicting ligand-binding sites using similar structures. |
Wass MN, Kelley LA and Sternberg
MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed] |
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