Job Description P37746 Confidence 2.46% Date Thu Jan 5 11:57:22 GMT 2012 Rank 13 Aligned Residues 309 % Identity 15% Template c3rkoN_ PDB info PDB header:oxidoreductase Chain: N: PDB Molecule:nadh-quinone oxidoreductase subunit n; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution Resolution 3.00 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.										.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.	.
Query Sequence		M	N	T	N	K	L	S	L	R	R	N	V	I	Y	L	A	V	V	Q	G	S	N	Y	L	L	P	L	L	T	F	P	Y	L	V	R	T	L	G	.	.	.	.	.	.	.	.	.	P	E	N	F	G	I	F	G	F	C	Q	A	T	M	L	Y	M	I	M	F	V	E	Y	G	F	N	L	T	A	T	Q	S	I
Query Conservation																																								.	.	.	.	.	.	.	.	.
Alig confidence																																								.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	A	F	R	Q	K	R	S	L	E	A	S	I	K	Y	T	I	L	S	A	A	A	S	S	F	L	L	F	G	M	A	L	V	Y	A	Q	S	G	D	L	S	F	V	A	L	G	K	N	E	P	L	L	L	A	G	F	G	L	M	I	V	G	L	G	F	K	L	S	L	V	P	F	H	L	W	T	P	D	V	Y
Template Known Secondary structure		T	T	T	T	S																																S	S			S	S	S		S																							T		T	T	S		T
Template Predicted Secondary structure
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	A	A	D	S	K	D	K	V	T	S	I	F	W	A	V	I	F	S	K	I	V	L	I	V	I	T	L	I	F	L	T	S	M	T	L	L	V	P	E	Y	N	K	H	A	V	I	I	W	S	F	V	P	A	L	V	G	N	L	I	Y	P	I	W	L	F	Q	G	K	E	K	M	K	W	L	T	L	S	S
Query Conservation
Alig confidence						.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	G	A	P	.	.	.	.	.	.	.	.	.	.	A	P	V	S	T	F	L	A	T	A	S	K	I	A	I	F	G	V	V	M	R	L	F	L	Y	A	P	V	G	D	S	E	A	I	R	V	V	L	A	I	I	A	F	A	S	I	I	F	G	N	L	M	A	L	S	Q	T	N	I	K	R	L	L	G	Y	S
Template Known Secondary structure				S		.	.	.	.	.	.	.	.	.	.									T																		G	G	G	G		S																							T			B
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.
Template SS confidence
		232	.	.	.											.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.			.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																												.	.
Query SS confidence																																												.	.
Query Sequence		I	L	S	R	L	A	I	I	P	L	T	F	I	F	V	N	T	K	S	D	I	A	I	A	G	F	I	Q	S	S	A	N	L	V	A	G	I	I	A	L	A	I	.	.	V	V	H	E	G	W	I	G	K	V	T	L	S	L	H	N	V	R	R	S	L	A	D	G	F	H	V	F	I	S	T	S	A	I	S	L
Query Conservation																																												.	.
Alig confidence																																												.	.
Template Conservation
Template Sequence		S	I	S	H	L	G	Y	L	L	V	A	L	I	A	L	Q	T	G	E	M	S	M	E	A	V	G	V	Y	L	A	G	Y	L	F	S	S	L	G	A	F	G	V	V	S	L	M	S	S	P	Y	R	G	P	D	A	D	S	L	F	S	Y	R	G	L	F	W	H	R	P	I	L	A	A	V	M	T	V	M	M	L
Template Known Secondary structure															T	S	S	S		S																														S			S	S				B	G	G	G		S	S		T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.			.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure																																								.	.
Query SS confidence																																								.	.
Query Sequence		Y	S	T	G	I	V	I	I	L	G	F	I	S	G	P	T	S	V	G	N	F	N	A	A	N	T	I	R	N	A	L	Q	G	L	L	N	P	I	.	.	T	Q	A	I	Y	P	R	I	S	S	T	L	V	L	N	R	V	K	G	V	I	L	I	K	K	S	L	T	C	L	S	L	I	G	G	A	F	S	L	I
Query Conservation																																								.	.
Alig confidence																																								.	.
Template Conservation
Template Sequence		S	L	A	G	I	P	M	T	L	G	F	I	G	K	F	Y	V	L	A	V	G	V	Q	A	H	L	W	W	L	V	G	A	V	V	V	G	S	A	I	G	L	Y	Y	Y	L	R	V	A	V	S	L	Y	L	H	A	P	E	Q	P	S	N	W	Q	Y	S	A	G	G	I	V	V	L	I	S	A	L	L	V	L	V
Template Known Secondary structure			T	T	T		T	T	S																T	T																												S								S	T	T
Template Predicted Secondary structure
Template SS confidence
		382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.
		308	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	L	G	A	S	I	L	V	K	I	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	G	V	W	P	Q	P	L	I	S	I	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		467	.	.	470	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions