Job Description P37746 Confidence 100.00% Date Thu Jan 5 11:57:22 GMT 2012 Rank 1 Aligned Residues 406 % Identity 13% Template c3mkuA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:multi antimicrobial extrusion protein (na(+)/drug PDBTitle: structure of a cation-bound multidrug and toxin compound extrusion2 (mate) transporter Resolution 4.20 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.			.	.	.	.	.	.
Predicted Secondary structure																																																																										.	.
Query SS confidence																																																																										.	.
Query Sequence		N	T	N	K	L	S	L	R	R	N	V	I	Y	L	A	V	V	Q	G	S	N	Y	L	L	P	L	L	T	F	P	Y	L	V	R	T	L	G	P	E	N	F	G	I	F	G	F	C	Q	A	T	M	L	Y	M	I	M	F	V	E	Y	G	F	N	L	T	A	T	Q	S	I	A	K	.	.	A	A	D	S	K	D
Query Conservation																																																																										.	.
Alig confidence																																				.																								.														.	.
Template Conservation																																				.																								.
Template Sequence		K	K	E	A	S	N	L	I	K	L	A	T	P	V	L	I	A	S	V	A	Q	T	G	M	G	F	V	D	T	I	M	A	G	G	.	V	S	A	I	D	M	A	A	V	S	I	A	A	S	I	W	L	P	S	I	L	F	G	.	V	G	L	L	M	A	L	V	P	V	V	A	Q	L	N	G	A	G	R	Q	H
Template Known Secondary structure																																				.		T	T	T	T	T	T																	.								G	G	G		T	T	S		S	S	S	S	S	S
Template Predicted Secondary structure																																				.																								.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.		.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110										.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.	.
Query Sequence		K	V	T	S	I	F	W	A	V	I	F	S	K	I	V	L	I	V	I	T	L	I	F	L	T	S	M	T	L	L	V	.	.	.	.	.	.	.	.	.	P	E	Y	N	K	H	A	V	I	I	W	S	F	V	P	A	L	V	G	N	L	I	Y	P	I	W	L	F	Q	G	K	E	K	M	K	W	L	T	L	S
Query Conservation																																	.	.	.	.	.	.	.	.	.
Alig confidence																																	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	I	P	F	E	V	H	Q	G	L	I	L	A	L	L	V	S	V	P	I	I	A	V	L	F	Q	T	Q	F	I	I	R	F	M	D	V	E	E	A	M	A	T	K	T	V	G	Y	M	H	A	V	I	F	A	V	P	A	Y	L	L	F	Q	A	L	R	S	F	T	D	G	M	S	L	T	K	P	A	M	V	I
Template Known Secondary structure		S																															S	S		S	S	T	T																											T	T	T	T		T	T	S
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.						.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.								.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.																																							.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.																																							.	.	.	.	.	.	.
Query Sequence		S	I	L	S	R	L	A	I	I	P	L	T	F	I	F	V	.	.	.	.	.	N	T	K	S	D	I	A	I	A	G	F	I	Q	S	S	A	N	L	V	A	G	I	I	A	L	A	I	V	V	H	E	G	W	I	G	K	V	T	.	.	.	.	.	.	.	L	S	L	H	N	V	R	R	S	L	A	D	G	F
Query Conservation																		.	.	.	.	.																																							.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.																																							.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	F	I	G	L	L	L	N	I	P	L	N	W	I	F	V	Y	G	K	F	G	A	P	E	L	G	G	V	G	C	G	V	A	T	A	I	V	Y	W	I	M	L	L	L	L	L	F	Y	I	V	T	S	K	R	L	A	H	V	K	V	F	E	T	F	H	K	P	Q	P	K	E	L	I	R	L	F	R	L	G	F
Template Known Secondary structure																		T	T		S	S																														T		T	T												S	S	T	T	T	S	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.		.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure																																																																							.
Query SS confidence																																																																							.
Query Sequence		H	V	F	I	S	T	S	A	I	S	L	Y	S	T	G	I	V	I	I	L	G	F	I	S	G	P	T	S	V	G	N	F	N	A	A	N	T	I	R	N	A	L	Q	G	L	L	N	P	I	T	Q	A	I	Y	P	R	I	S	S	T	L	V	L	N	R	V	K	G	V	.	I	L	I	K	K	S	L	T	C	L
Query Conservation																																																																							.
Alig confidence																								.																																															.
Template Conservation																								.
Template Sequence		P	V	A	A	A	L	F	F	E	V	T	L	F	A	V	V	A	L	L	V	A	P	.	L	G	S	T	V	V	A	A	H	Q	V	A	L	N	F	S	S	L	V	F	M	F	P	M	S	I	G	A	A	V	S	I	R	V	G	H	K	L	G	E	Q	D	T	K	G	A	A	I	A	A	N	V	G	L	M	T	G
Template Known Secondary structure																					T			.	S		S	T					T	T																											G	G	G	S	S				T	T	T	T
Template Predicted Secondary structure																								.
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.		.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320			.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.		370	.	.	.	.
Predicted Secondary structure																									.	.																																																		.
Query SS confidence																									.	.																																																		.
Query Sequence		S	L	I	G	G	A	F	S	L	I	L	L	L	G	A	S	I	L	V	K	I	S	I	.	.	G	P	G	Y	D	N	A	V	I	V	L	M	I	I	S	P	L	P	F	L	I	S	L	S	N	V	Y	G	I	Q	V	M	L	T	H	N	Y	K	K	E	F	S	K	I	L	I	A	A	G	.	L	L	S	L	L
Query Conservation																									.	.																																																		.
Alig confidence																									.	.																												.																						.
Template Conservation																																																						.
Template Sequence		L	A	T	A	C	I	T	A	L	L	T	V	L	F	R	E	Q	I	A	L	L	Y	T	E	N	Q	V	V	V	A	L	A	M	Q	L	L	L	F	A	A	I	Y	Q	C	M	D	A	V	Q	V	V	A	.	A	G	S	L	R	G	Y	K	D	M	T	A	I	F	H	R	T	F	I	S	Y	W	V	L	G	L	P
Template Known Secondary structure																						T	S	S		S	S	T	T																									.					G	G	G	S	S
Template Predicted Secondary structure																																																						.
Template SS confidence
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.		.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
		375	.	.	.	.	380	.	.								.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.
Predicted Secondary structure										.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.
Query Sequence		L	I	F	P	L	T	T	L	.	.	.	.	.	.	.	F	K	E	I	G	A	A	I	T	L	L	A	T	E	C	L	V	T	S	L	M	L	M	F	V	R	N	N	K
Query Conservation										.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	G	Y	I	L	G	M	T	N	W	L	T	E	Q	P	L	G	A	K	G	F	W	L	G	F	I	I	G	L	S	A	A	A	L	M	L	G	Q	R	L	Y	W	L	Q
Template Known Secondary structure											S	S	S			S																					T	G	G	G	S	T	T	T
Template Predicted Secondary structure
Template SS confidence
		405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.