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Job DescriptionP37746
Confidence1.44%DateThu Jan 5 11:57:22 GMT 2012
Rank29Aligned Residues216
% Identity5%Templatec3aqpB_
PDB info PDB header:membrane proteinChain: B: PDB Molecule:probable secdf protein-export membrane protein; PDBTitle: crystal structure of secdf, a translocon-associated membrane protein,2 from thermus thrmophilus
Resolution3.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   111........120.........130.........140.........150.........160.........170.........180.........190
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Query Sequence  PEYNKHAVIIWSFVPALVGNLIYPIWLFQGKEKMKWLTLSSILSRLAIIPLTFIFVNTKSDIAIAGFIQSSANLVAGIIA
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Template Sequence  PTLGQDAIQAGIRSALIGTLAIFLLIFAYYGPHLGLVASLGLLYTSALILGLLSGLGATLTLPGIAGLVLTLGAAVDGNV
Template Known Secondary structure  T


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   264.....270.........280.........290.........300.........310.........320.........330.........340...
 
   191........200.........210.........220.........230.........240.........250.........260.........270
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Query Sequence  LAIVVHEGWIGKVTLSLHNVRRSLADGFHVFISTSAISLYSTGIVIILGFISGPTSVGNFNAANTIRNALQGLLNPITQA
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Template Sequence  LSFERIKEELRAGKKLRQAIPEGFRHSTLTIMDVNIAHLLAAAALYQYATGPVRGFAVILAIGVVASVFSNLVFSRHLLE
Template Known Secondary structure  TT

T

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   344.....350.........360.........370.........380.........390.........400.........410.........420...
 
   271........280.........290.........300.........310.........320......
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Query Sequence  IYPRISSTLVLNRVKGVILIKKSLTCLSLIGGAFSLILLLGASILVKISIGPGYDN
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Template Sequence  RLADRGEIRPPMWLVDPRFNFMGPARYVTAATLLLAALAAGVVFAKGFNYSIDFTG
Template Known Secondary structure  T












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   424.....430.........440.........450.........460.........470.........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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