Job Description P42907 Confidence 99.70% Date Thu Jan 5 12:02:05 GMT 2012 Rank 26 Aligned Residues 175 % Identity 17% Template c3shoA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, rpir family; PDBTitle: crystal structure of rpir transcription factor from sphaerobacter2 thermophilus (sugar isomerase domain) Resolution 1.80 Å

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	E	I	R	H	Q	P	R	A	W	I	R	S	L	T	N	I	D	A	L	R	S	A	L	N	N	F	L	E	P	L	L	R	K	E	N	L	R	I	I	L	T	G	A	G	T	S	A	F	I	G	D	I	I	A	P	W	L	A	S	H	T	G	K	N	F	S	A	V	P	T	T	D	L	V	T	N	P	M	D
Query Conservation
Alig confidence																			.	.													.	.	.
Template Conservation																			.	.													.	.	.
Template Sequence		Q	V	F	T	N	D	I	E	N	L	N	Q	T	L	N	Q	T	.	.	Q	P	E	A	I	E	A	A	V	E	A	I	.	.	.	R	A	D	H	V	I	V	V	G	X	G	F	S	A	A	V	A	V	F	L	G	H	G	L	N	S	L	G	I	R	T	T	V	L	T	E	G	G	S	T	L	T	I	T	L	A
Template Known Secondary structure																	T		.	.													.	.	.			S								G	G	G														T	T										T
Template Predicted Secondary structure																			.	.													.	.	.
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.			120	.	.	.	.	.	.	.	.	.	130	.				.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	L	N	P	A	H	P	L	L	L	I	S	F	G	R	S	G	N	S	P	E	S	V	A	A	V	E	L	A	N	Q	F	V	P	E	C	Y	H	L	P	I	T	C	N	E	A	G	A	L	Y	Q	N	A	I	N	S	D	N	A	F	A	L	L	M	P	A	E	T	H	D	R	G	F	A	M	T	S	S	I	T
Query Conservation
Alig confidence								.	.																										.	.																										.	.	.	.	.	.	.	.	.
Template Conservation								.	.																										.	.																										.	.	.	.	.	.	.	.	.
Template Sequence		N	L	R	P	T	D	.	.	L	X	I	G	V	S	V	W	R	Y	L	R	D	T	V	A	A	L	A	G	A	A	E	R	G	.	.	V	P	T	X	A	L	T	D	S	S	V	S	P	P	A	R	I	A	D	H	V	L	V	A	A	.	.	.	.	.	.	.	.	.	T	R	G	V	G	H	S	L	S	P	V
Template Known Secondary structure		T			T	T		.	.								S	S															T	T	.	.								S		T	T	S							S							.	.	.	.	.	.	.	.	.				S	S	S	S
Template Predicted Secondary structure								.	.																										.	.																										.	.	.	.	.	.	.	.	.
Template SS confidence
		179	180	.	.	.	.			.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.			210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.										.	.	.	.	.	240	.	.	.	.	.
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.		.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure																	.
Query SS confidence																	.
Query Sequence		T	M	M	A	S	C	L	A	V	F	A	P	E	T	I	.	N	S	Q	T	F	R	D	V	A	D	R	C	Q	A	I	L	T	S
Query Conservation																	.
Alig confidence																	.
Template Conservation
Template Sequence		G	L	I	A	V	V	N	L	L	L	A	E	I	A	V	R	E	P	E	R	A	L	A	V	L	R	E	V	D	R	L	Y	R	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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