Job Description P42907 Confidence 100.00% Date Thu Jan 5 12:02:05 GMT 2012 Rank 6 Aligned Residues 326 % Identity 14% Template c2amlB_ PDB info PDB header:transferase Chain: B: PDB Molecule:sis domain protein; PDBTitle: crystal structure of lmo0035 protein (46906266) from listeria2 monocytogenes 4b f2365 at 1.50 a resolution Resolution 1.50 Å

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		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	E	E	E	I	R	H	Q	P	R	A	W	I	R	S	L	T	N	I	D	A	L	R	S	A	L	N	N	F	L	E	P	L	L	R	K	E	N	L	R	I	I	L	T	G	A	G	T	S	A	F	I	G	D	I	I	A	P	W	L	A	S	H	T	G	K	N	F	S	A	V	P	T	T	D	L	V	T	N	P
Query Conservation
Alig confidence																																	.	.	.	.
Template Conservation																																	.	.	.	.
Template Sequence		X	X	T	Y	I	N	E	E	E	E	X	C	R	V	I	L	A	D	F	Q	T	N	A	E	K	L	E	S	L	V	K	.	.	.	.	N	G	A	K	E	W	L	I	L	A	T	G	S	S	L	N	A	A	Q	S	A	K	Y	Y	I	E	N	L	A	D	V	R	I	T	I	E	E	P	F	N	H	L	Y	Y	E
Template Known Secondary structure							T	T																								T	.	.	.	.	T			S																									S	S
Template Predicted Secondary structure																																	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.					.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.		.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure																																	.
Query SS confidence																																	.
Query Sequence		M	D	Y	L	N	P	A	H	P	L	L	L	I	S	F	G	R	S	G	N	S	P	E	S	V	A	A	V	E	L	A	.	N	Q	F	V	P	E	C	Y	H	L	P	I	T	C	N	E	A	G	A	L	Y	Q	N	A	I	N	S	D	N	A	F	A	L	L	M	P	A	E	T	H	D	R	G	F	A	M	T	S
Query Conservation																																	.
Alig confidence			.	.	.																												.					.	.																				.	.	.	.	.	.
Template Conservation			.	.	.																																	.	.																				.	.	.	.	.	.
Template Sequence		K	.	.	.	L	S	S	H	L	D	L	V	I	G	I	S	Q	S	G	Q	S	T	S	T	I	S	A	L	E	R	V	K	K	E	A	S	.	.	V	P	V	V	A	L	T	S	D	V	T	S	E	I	A	E	F	A	D	.	.	.	.	.	.	I	T	L	D	I	G	S	G	K	E	R	V	G	Y	V	T	K
Template Known Secondary structure			.	.	.			T	T									S	S	S		B																.	.								S		T	T	S	G	G	G	G	G		S	.	.	.	.	.	.						S						S	S	S		S
Template Predicted Secondary structure			.	.	.																																	.	.																				.	.	.	.	.	.
Template SS confidence
		81				.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.			.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.							.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
		175	.	.	.	.	180	.	.	.	.	.	.	.													.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.		.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.																															.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.																															.
Query Sequence		S	I	T	T	M	M	A	S	C	L	A	V	F	.	.	.	.	.	.	.	.	.	.	.	.	A	P	E	T	I	N	S	Q	T	F	R	D	V	A	D	R	C	Q	A	I	L	T	S	L	G	D	F	S	E	G	.	V	F	G	Y	A	P	W	K	R	I	V	Y	L	G	S	G	G	L	Q	G	A	A	R	E
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.																															.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.																															.
Template Conservation
Template Sequence		G	F	T	A	T	V	L	T	L	X	L	T	G	L	H	F	A	Y	K	T	V	Q	I	D	E	T	R	F	N	N	E	I	S	A	F	S	R	A	I	D	A	I	P	A	T	I	A	E	T	E	A	F	Y	E	R	W	Q	E	E	F	A	T	A	P	K	F	T	A	I	G	Y	G	P	T	V	G	T	C	K	E
Template Known Secondary structure																					T	T	S	S																		T																				T	T										T	T
Template Predicted Secondary structure
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	L	K	V	L	E	L	T	A	G	K	L	A	A	F	Y	D	S	P	T	G	F	R	H	G	P	K	S	L	V	D	D	E	T	L	V	V	V	F	V	S	S	H	P	Y	T	R	Q	Y	D	L	D	L	L	A	E	L	R	R	D	N	Q	A	M	R	V	I	A	I	A	A	E	S	S	D	I	V	A	A
Query Conservation
Alig confidence											.	.																																							.																												.	.	.
Template Conservation											.	.																																							.																												.	.	.
Template Sequence		F	E	T	K	F	S	E	T	V	.	.	R	V	P	S	Q	G	L	D	L	E	A	F	X	H	G	P	Y	L	E	V	N	P	Q	H	R	I	F	F	L	E	T	A	S	A	V	T	E	R	.	L	V	L	L	R	D	Y	E	S	K	Y	T	P	F	T	Y	T	V	K	F	G	K	G	E	D	D	R	.	.	.
Template Known Secondary structure										T	.	.		S							T	T	G	G	G	G	T	G	G	G	G			T	T										S	T	T				.									T	T	T		S								S			S	S	T	T	.	.	.
Template Predicted Secondary structure											.	.																																							.																												.	.	.
Template SS confidence
		230	.	.	.	.	.	.	.	.			.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.		.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	P	H	I	I	L	P	P	S	R	H	F	I	D	V	E	Q	A	F	C	F	L	M	Y	A	Q	T	F	A	L	M	Q	S	L	H	M	G	N	T	P	D	T	P	S	A
Query Conservation
Alig confidence		.	.	.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	T	L	V	I	P	T	D	L	D	E	Y	Q	A	P	F	L	X	I	L	P	F	Q	I	L	A	H	H	I	A	E	L	K	G	N	K	L	T	E	R	I	Y
Template Known Secondary structure		.	.	.	.					S	S				T	T	T	T					T														T	T			T	T	S			S
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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