Job Description P77416 Confidence 100.00% Date Thu Jan 5 12:29:02 GMT 2012 Rank 3 Aligned Residues 453 % Identity 19% Template c3rkoN_ PDB info PDB header:oxidoreductase Chain: N: PDB Molecule:nadh-quinone oxidoreductase subunit n; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution Resolution 3.00 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	N	L	A	L	T	T	L	L	L	P	F	I	G	A	L	V	V	S	F	S	P	Q	R	R	A	A	E	W	G	V	L	F	A	A	L	T	T	L	C	M	L	S	L	I	S	A	F	Y	Q	A	D	K	V	A	V	T	L	T	L	V	N	V	G	D	V	A	L	F	G	L	V	I	D	R	V	S	T	L	I
Query Conservation
Alig confidence																																																														.	.	.	.	.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.	.	.	.	.
Template Sequence		N	L	I	A	L	L	P	L	L	I	V	G	L	T	V	V	V	V	M	L	S	I	A	W	R	R	N	H	F	L	N	A	T	L	S	V	I	G	L	N	A	A	L	V	S	L	W	F	V	G	Q	A	G	A	M	D	V	T	P	L	.	.	.	.	.	.	.	.	.	.	M	R	V	D	G	F	A	M	L	Y
Template Known Secondary structure					T	T																				T																											S						S	T	T	.	.	.	.	.	.	.	.	.	.	B			S
Template Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.											.	.	.	70	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.		.	.	.	.	160
Predicted Secondary structure																																																																												.
Query SS confidence																																																																												.
Query Sequence		L	F	V	V	V	F	L	G	L	L	V	T	I	Y	S	T	G	Y	L	T	D	K	N	R	E	H	P	H	N	G	T	N	R	Y	Y	A	F	L	L	V	F	I	G	A	M	A	G	L	V	L	S	S	T	L	L	G	Q	L	L	F	F	E	I	T	G	G	C	S	W	A	L	I	S	Y	.	Y	Q	S	D	K
Query Conservation																																																																												.
Alig confidence																								.	.	.	.	.																																																.
Template Conservation																								.	.	.	.	.
Template Sequence		T	G	L	V	L	L	A	S	L	A	T	C	T	F	A	Y	P	W	L	E	G	Y	.	.	.	.	.	N	D	N	K	D	E	F	Y	L	L	V	L	I	A	A	L	G	G	I	L	L	A	N	A	N	H	L	A	S	L	F	L	G	I	E	L	I	S	L	P	L	F	G	L	V	G	Y	A	F	R	Q	K	R
Template Known Secondary structure																								.	.	.	.	.	S	S																					T	B		S	S										T	T									T	T	T	T	S
Template Predicted Secondary structure																								.	.	.	.	.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.						.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	R	S	A	L	K	A	L	L	I	T	H	I	G	S	L	G	L	Y	L	A	A	A	T	L	F	L	Q	T	G	T	F	A	L	S	A	M	S	E	L	H	G	D	A	R	Y	L	V	Y	G	G	I	L	F	A	A	W	G	K	S	A	Q	L	P	M	Q	A	W	L	P	D	A	M	E	A	P	T	P	I
Query Conservation
Alig confidence																																								.
Template Conservation																																								.
Template Sequence		S	L	E	A	S	I	K	Y	T	I	L	S	A	A	A	S	S	F	L	L	F	G	M	A	L	V	Y	A	Q	S	G	D	L	S	F	V	A	L	.	G	K	N	E	P	L	L	L	A	G	F	G	L	M	I	V	G	L	G	F	K	L	S	L	V	P	F	H	L	W	T	P	D	V	Y	Q	G	A	P	A	P
Template Known Secondary structure																															S	S			S	S	S		S	.																							T		T	T	S		T									S
Template Predicted Secondary structure																																								.
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.		.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.
Query SS confidence																										.
Query Sequence		S	A	Y	L	H	A	A	S	M	V	K	V	G	V	Y	I	F	A	R	A	I	I	D	G	.	G	N	I	P	H	V	I	G	G	V	G	M	V	M	A	L	V	T	I	L	Y	G	F	L	M	Y	L	P	Q	Q	D	M	K	R	L	L	A	W	S	T	I	T	Q	L	G	W	M	F	F	G	L	S	L	S	I
Query Conservation																										.
Alig confidence																										.
Template Conservation
Template Sequence		V	S	T	F	L	A	T	A	S	K	I	A	I	F	G	V	V	M	R	L	F	L	Y	A	P	V	G	D	S	E	A	I	R	V	V	L	A	I	I	A	F	A	S	I	I	F	G	N	L	M	A	L	S	Q	T	N	I	K	R	L	L	G	Y	S	S	I	S	H	L	G	Y	L	L	V	A	L	I	A	L	Q
Template Known Secondary structure								T																		G	G	G	G		S																							T			B																						T	S	S
Template Predicted Secondary structure
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.				.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure																																								.	.	.
Query SS confidence																																								.	.	.
Query Sequence		F	G	S	R	L	A	L	E	G	S	I	A	Y	I	V	N	H	A	F	A	K	S	L	F	F	L	V	A	G	A	L	S	Y	S	C	G	T	R	.	.	.	L	L	P	R	L	R	G	V	L	H	T	L	P	L	P	G	V	G	F	C	V	A	A	L	A	I	T	G	V	P	P	F	N	G	F	F	S	K	F
Query Conservation																																								.	.	.
Alig confidence		.																																						.	.	.
Template Conservation		.
Template Sequence		.	T	G	E	M	S	M	E	A	V	G	V	Y	L	A	G	Y	L	F	S	S	L	G	A	F	G	V	V	S	L	M	S	S	P	Y	R	G	P	D	A	D	S	L	F	S	Y	R	G	L	F	W	H	R	P	I	L	A	A	V	M	T	V	M	M	L	S	L	A	G	I	P	M	T	L	G	F	I	G	K	F
Template Known Secondary structure		.	S		S																														S			S	S				B	G	G	G		S	S		T	T	T	S														T	T	T		T	T	S
Template Predicted Secondary structure		.
Template SS confidence
			318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	F	A	A	G	F	A	L	S	V	E	Y	W	I	L	L	P	A	M	I	L	L	M	I	E	S	V	A	S	F	A	W	F	I	R	W	F	G	R	V	V	P	G	K	P	S	E	A	V	A	D	A	A	P	L	P	G	S	M	R	L	V	L	I	V	L	I	V	M	S	L	I	S	S	V	I	A	A	T
Query Conservation
Alig confidence													.	.	.	.	.																																						.	.	.
Template Conservation													.	.	.	.	.																																						.	.	.
Template Sequence		Y	V	L	A	V	G	V	Q	A	H	L	.	.	.	.	.	W	W	L	V	G	A	V	V	V	G	S	A	I	G	L	Y	Y	Y	L	R	V	A	V	S	L	Y	L	H	A	P	E	Q	P	S	N	W	Q	.	.	.	Y	S	A	G	G	I	V	V	L	I	S	A	L	L	V	L	V	L	G	V	W	P	Q	P
Template Known Secondary structure										T	T		.	.	.	.	.																											S								S	T	T	.	.	.
Template Predicted Secondary structure													.	.	.	.	.																																						.	.	.
Template SS confidence
		397	.	.	400	.	.	.	.	.	.	.						.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.				.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.
		477	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	L	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	I	S
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		474	.	.