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Job DescriptionP77416
Confidence100.00%DateThu Jan 5 12:29:02 GMT 2012
Rank2Aligned Residues459
% Identity19%Templatec3rkoM_
PDB info PDB header:oxidoreductaseChain: M: PDB Molecule:nadh-quinone oxidoreductase subunit m; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10.........20.........30.........40.........50.........60........ .70..
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Query Sequence  LALTTLLLPFIGALVVSFSPQRRAAEWGVLFAALTTLCMLSLISAFYQADKVAVTLTLVNVGDVA. . . . . . . . . . . LFGL
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Template Sequence  LLPWLILIPFIGGFLCWQTERFGVKVPRWIALITMGLTLALSLQLWLQGGYSLTQSAGIPQWQSEFDMPWIPRFGISIHL
Template Known Secondary structure 
TTGGG
TTS
SS

S
S
SS

SGGGT
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   2.......10.........20.........30.........40.........50.........60.........70.........80.
 
   73......80.........90.........100.........110.........120.........130.........140.........150..
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Query Sequence  VIDRVSTLILFVVVFLGLLVTIYSTGYLTDKNREHPHNGTNRYYAFLLVFIGAMAGLVLSSTLLGQLLFFEITGGCSWAL
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Template Sequence  AIDGLSLLMVVLTGLLGVLAVLCSWKEIEKYQG. . . . . . . . FFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFL
Template Known Secondary structure 
TTTT

SS
........B
B
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   82.......90.........100.........110.... .....120.........130.........140.........150...
 
   153.. ....160.........170.........180.........190...... ...200.........210.........
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Query Sequence  ISY. . . . . YQSDKAQRSALKALLITHIGSLGLYLAAATLFLQTGTFALS. . . . . . . . AMSELHGDARYLVYGGILFAAWG
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Template Sequence  IALWGHKASDGKTRITAATKFFIYTQASGLVMLIAILALVFVHYNATGVWTFNYEELLNTPMSSGVEYLLMLGFFIAFAV
Template Known Secondary structure 



SS


TTTS



B



TT
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   154.....160.........170.........180.........190.........200.........210.........220.........230...
 
   220.........230.........240.........250.........260.... .....270.........280.........290........
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Query Sequence  KSAQLPMQAWLPDAMEAPTPISAYLHAASMVKVGVYIFARAIIDG. GNIPHVIGGVGMVMALVTILYGFLMYLPQQDMKR
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Template Sequence  KMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPIAMWLGVIGIFYGAWMAFAQTDIKR
Template Known Secondary structure  TT
SSTTTS
TTTTST
SB
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   234.....240.........250.........260.........270.........280.........290.........300.........310...
 
   299300.........310.........320.........330.........340.........350.........360.........370........
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Query Sequence  LLAWSTITQLGWMFFGLSLSIFGSRLALEGSIAYIVNHAFAKSLFFLVAGALSYSCGTRLLPRLRGVLHTLPLPGVGFCV
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Template Sequence  LIAYTSVSHMGFVLIAIY. . . TGSQLAYQGAVIQMIAHGLSAAGLFILCGQLYERIHTRDMRMMGGLWSKMKWLPALSLF
Template Known Secondary structure  T...S




BGGG

SGGGT
SS
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   314.....320.........330. ........340.........350.........360.........370.........380.........390
 
   379380.........390.........400.........410.........420.........430.........440........ .450......
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Query Sequence  AALAITGVPPFNGFFSKFPLFAAGFALSVEYWILLPAMILLMIESVASFAWFIRWFGRVVPGKPSEAVAD. . AAPLPGSM
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Template Sequence  FAVATLGMPGTGNFVGEFMILFGSFQVV. . . . . . PVITVISTFGLVFASVYSLAMLHRAYFGKAKSQIASQELPGMSLRE
Template Known Secondary structure  S

TTS
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SSTT
SS




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   391........400.........410........ .420.........430.........440.........450.........460....
 
   457..460.........470.........
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Query Sequence  RLVLIVLIVMSLISSVIAATWLQ
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Template Sequence  LFMILLLVVLLVLLGFYPQPILD
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   465....470.........480.......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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