Job Description P77416 Confidence 100.00% Date Thu Jan 5 12:29:02 GMT 2012 Rank 1 Aligned Residues 457 % Identity 32% Template c3rkoL_ PDB info PDB header:oxidoreductase Chain: L: PDB Molecule:nadh-quinone oxidoreductase subunit l; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution Resolution 3.00 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.					30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.					.	.	.	70	.	.	.	.
Predicted Secondary structure																													.	.	.	.																																						.	.	.	.
Query SS confidence																													.	.	.	.																																						.	.	.	.
Query Sequence		N	L	A	L	T	T	L	L	L	P	F	I	G	A	L	V	V	S	F	S	P	Q	R	R	A	A	E	.	.	.	.	W	G	V	L	F	A	A	L	T	T	L	C	M	L	S	L	I	S	A	F	Y	Q	A	D	K	V	A	V	T	L	T	L	V	N	V	G	D	.	.	.	.	V	A	L	F	G	L	V	I
Query Conservation																													.	.	.	.																																						.	.	.	.
Alig confidence																													.	.	.	.																																						.	.	.	.
Template Conservation
Template Sequence		N	M	L	A	L	T	I	I	L	P	L	I	G	F	V	L	L	A	F	S	R	G	R	W	S	E	N	V	S	A	I	V	G	V	G	S	V	G	L	A	A	L	V	T	A	F	I	G	V	D	F	F	A	N	G	E	Q	T	Y	S	Q	P	L	W	T	W	M	S	V	G	D	F	N	I	G	F	N	L	V	L
Template Known Secondary structure				T	T																		S		S																														T	T	S														S	S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	R	V	S	T	L	I	L	F	V	V	V	F	L	G	L	L	V	T	I	Y	S	T	G	Y	L	T	D	K	N	R	E	H	P	H	N	G	T	N	R	Y	Y	A	F	L	L	V	F	I	G	A	M	A	G	L	V	L	S	S	T	L	L	G	Q	L	L	F	F	E	I	T	G	G	C	S	W	A	L	I	S
Query Conservation
Alig confidence																																		.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.
Template Sequence		D	G	L	S	L	T	M	L	S	V	V	T	G	V	G	F	L	I	H	M	Y	A	S	W	Y	M	R	G	E	E	G	Y	.	.	.	.	.	.	S	R	F	F	A	Y	T	N	L	F	I	A	S	M	V	V	L	V	L	A	D	N	L	L	L	M	Y	L	G	W	E	G	V	G	L	C	S	Y	L	L	I	G
Template Known Secondary structure																											T	S	S		S			.	.	.	.	.	.																			T	B	S	B	S																			T
Template Predicted Secondary structure																																		.	.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.							.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		155		.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.								200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure			.																																													.	.	.	.	.	.	.
Query SS confidence			.																																													.	.	.	.	.	.	.
Query Sequence		Y	.	Y	Q	S	D	K	A	Q	R	S	A	L	K	A	L	L	I	T	H	I	G	S	L	G	L	Y	L	A	A	A	T	L	F	L	Q	T	G	T	F	A	L	S	A	M	S	.	.	.	.	.	.	.	E	L	H	G	D	A	R	Y	L	V	Y	G	G	I	L	F	A	A	W	G	K	S	A	Q	L	P	M
Query Conservation			.																																													.	.	.	.	.	.	.
Alig confidence			.																																													.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	Y	Y	T	D	P	K	N	G	A	A	A	M	K	A	F	V	V	T	R	V	G	D	V	F	L	A	F	A	L	F	I	L	Y	N	E	L	G	T	L	N	F	R	E	M	V	E	L	A	P	A	H	F	A	D	G	N	N	M	L	M	W	A	T	L	M	L	L	G	G	A	V	G	K	S	A	Q	L	P	L
Template Known Secondary structure		T	S	T	T	S																																T	S			B													T	T		S	S	S																	T		T	T	S
Template Predicted Secondary structure
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	W	L	P	D	A	M	E	A	P	T	P	I	S	A	Y	L	H	A	A	S	M	V	K	V	G	V	Y	I	F	A	R	A	I	I	D	G	G	N	I	P	H	V	I	G	G	V	G	M	V	M	A	L	V	T	I	L	Y	G	F	L	M	Y	L	P	Q	Q	D	M	K	R	L	L	A	W	S	T	I	T
Query Conservation
Alig confidence																																													.
Template Conservation																																													.
Template Sequence		Q	T	W	L	A	D	A	M	A	G	P	T	P	V	S	A	L	I	H	A	A	T	M	V	T	A	G	V	Y	L	I	A	R	T	H	G	L	F	L	M	T	P	E	.	V	L	H	L	V	G	I	V	G	A	V	T	L	L	L	A	G	F	A	A	L	V	Q	T	D	I	K	R	V	L	A	Y	S	T	M	S
Template Known Secondary structure		T	T						T	T	S											T	T												T						T	S			.																					T	T		S	B
Template Predicted Secondary structure																																													.
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.		.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.		.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure																																																	.
Query SS confidence																																																	.
Query Sequence		Q	L	G	W	M	F	F	G	L	S	L	S	I	F	G	S	R	L	A	L	E	G	S	I	A	Y	I	V	N	H	A	F	A	K	S	L	F	F	L	V	A	G	A	L	S	Y	S	.	C	G	T	R	L	L	P	R	L	R	G	V	L	H	T	L	P	L	P	G	V	G	F	C	V	A	A	L	A	I	T	G
Query Conservation																																																	.
Alig confidence														.	.	.	.	.	.																														.
Template Conservation														.	.	.	.	.	.
Template Sequence		Q	I	G	Y	M	F	L	A	L	G	V	Q	.	.	.	.	.	.	A	W	D	A	A	I	F	H	L	M	T	H	A	F	F	K	A	L	L	F	L	A	S	G	S	V	I	L	A	C	H	H	E	Q	N	I	F	K	M	G	G	L	R	K	S	I	P	L	V	Y	L	C	F	L	V	G	G	A	A	L	S	A
Template Known Secondary structure												T	T	.	.	.	.	.	.																														T	T	S			B	S	T	T					T	T	T																	T
Template Predicted Secondary structure														.	.	.	.	.	.
Template SS confidence
		315	.	.	.	.	320	.	.	.	.	.	.							.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
		386	.	.	.	390		.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.
Predicted Secondary structure							.
Query SS confidence							.
Query Sequence		V	P	P	F	N	.	G	F	F	S	K	F	P	L	F	A	A	G	F	A	L	S	V	E	Y	W	I	L	L	P	A	M	I	L	L	M	I	E	S	V	A	S	F	A	W	F	I	R	W	F	G	R	V	V	P	G	K	P	S	E	A	V	A	D	A	A	P	L	P	G	S	M	R	L	V	L	I	V	L	I
Query Conservation							.
Alig confidence							.																		.	.	.	.	.																																		.	.
Template Conservation																									.	.	.	.	.																																		.	.
Template Sequence		L	P	L	V	T	A	G	F	F	S	K	D	E	I	L	A	G	A	M	A	N	G	H	.	.	.	.	.	I	N	L	M	V	A	G	L	V	G	A	F	M	T	S	L	Y	T	F	R	M	I	F	I	V	F	H	G	K	E	Q	I	H	.	.	A	H	A	V	K	G	V	T	H	S	L	P	L	I	V	L	L
Template Known Secondary structure			S	S	S	B															T	T	T		.	.	.	.	.																											S	S				S		.	.
Template Predicted Secondary structure																									.	.	.	.	.																																		.	.
Template SS confidence
		389	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.						.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.			.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.
		465	.	.	.	.	470	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	M	S	L	I	S	S	V	I	A	A	T	W	L	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	L	S	T	F	V	G	A	L	I	V	P	P	L	Q
Template Known Secondary structure					B	T	T	G	G	G					T	T
Template Predicted Secondary structure
Template SS confidence
		462	.	.	.	.	.	.	.	470	.	.	.	.	.	.