Job Description P52627 Confidence 16.60% Date Thu Jan 5 12:05:54 GMT 2012 Rank 27 Aligned Residues 100 % Identity 15% Template c2p7vA_ PDB info PDB header:transcription Chain: A: PDB Molecule:regulator of sigma d; PDBTitle: crystal structure of the escherichia coli regulator of sigma 70, rsd,2 in complex with sigma 70 domain 4 Resolution 2.60 Å

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		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.		.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
Predicted Secondary structure																		.
Query SS confidence																		.
Query Sequence		K	I	E	I	S	R	L	D	T	L	L	D	E	N	G	W	.	Q	T	E	Q	K	S	W	A	A	L	C	R	F	C	G	D	L	H	C	K	T	Q	S	D	F	F	D	I	I	G	F	K	Q	F	L	F	E	Q	T	E	M	S	P	G	T	V	R	E	Y	V	V	R	L	R	R	L	G	N	H	L	H	E	Q
Query Conservation																		.
Alig confidence															.	.		.																								.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.																										.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	E	R	V	R	G	S	N	K	L	V	D	R	.	.	W	L	H	V	R	K	H	L	L	V	A	Y	Y	N	L	V	G	I	K	P	G	N	E	K	A	.	.	.	.	L	D	D	F	C	Q	S	L	V	D	Y	L	S	A	G	H	F	S	I	Y	E	R	I	L	H	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure						T	T	S							.	.																	S									.	.	.	.																		T							T	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure															.	.																										.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.			.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.					.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	I	S	L	D	Q	L	Q	D	G	F	L	D	E	I	L	A	P	W	L	P	T	T	S	T	N	N	Y	R	I	A	L	R	K	Y	Q	H	Y	Q	R	Q	T	C	T
Query Conservation
Alig confidence		.	.	.	.	.							.
Template Conservation		.	.	.	.	.							.
Template Sequence		.	.	.	.	.	K	L	E	G	N	G	.	Q	L	A	R	A	A	K	I	W	P	Q	L	E	A	N	T	Q	Q	I	M	D	Y	Y	D	S	S	L	E	T	A	I	D
Template Known Secondary structure		.	.	.	.	.	T			S			.
Template Predicted Secondary structure		.	.	.	.	.							.
Template SS confidence
							79	80	.	.	.	.		.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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