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Job DescriptionP33790
Confidence27.91%DateThu Jan 5 11:52:39 GMT 2012
Rank12Aligned Residues270
% Identity9%Templatec1f5nA_
PDB info PDB header:signaling proteinChain: A: PDB Molecule:interferon-induced guanylate-binding protein 1; PDBTitle: human guanylate binding protein-1 in complex with the gtp2 analogue, gmppnp.
Resolution1.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   668.670.........680.........690.........700.........710.........720.........730.........740.......
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Query Sequence  SRASHDARHDIDARATQDFKEASDYFTSRKVSESGSHTDNNADSRVDQLSAALNSAKQSYDQYTTNMTRSHEYAEMASRT
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Template Sequence  ENAVLALAQIENSAAVQKAIAHYEQQMGQKVQLPTESLQELLDLHRDSEREAIEVFIRSSFKDVDHLFQKELAAQLEKKR
Template Known Secondary structure 

SS
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GGG
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   313......320.........330.........340.........350.........360.........370.........380.........390..
 
   748.750.........760.........770.........780.........790.........800.........810.........820.......
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Query Sequence  ESMSGQMSEDLSQQFAQYVMKNAPQDVEAILTNTSSPEIAERRRAMAWSFVQEQVQPGVDNTWRESRRDIGKGMESVPSG
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Template Conservation                                                
         
        
              
Template Sequence  DDFCKQNQEASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMT
Template Known Secondary structure  TTTTSSTTSS


TTT
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   393......400.........410.........420.........430.........440.........450.........460.........470..
 
   828.830.........840.........850.........860.........870.........880.........890.........900.......
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Query Sequence  GGSQDIIADHQGHQAIIEQRTQDSNIRNDVKHQVDNMVTEYRGNIGDTQNSIRGEENIVKGQYSELQNHHKTEALTQNNK
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Template Sequence  DAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLAL
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   473......480.........490.........500.........510.........520.........530.........540.........550..
 
   908.910.........920.........930.......
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Query Sequence  YNEEKLAQERIPGADSPKELLEKAKSYQHK
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Template Conservation              
      
  

  

 
Template Sequence  KLQEQEQLLKEGFQKESRIMKNEIQDLQTK
Template Known Secondary structure  T
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   553......560.........570.........580..
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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