Job Description P24174 Confidence 98.60% Date Thu Jan 5 11:40:50 GMT 2012 Rank 118 Aligned Residues 201 % Identity 19% Template c3ogzA_ PDB info PDB header:transferase Chain: A: PDB Molecule:udp-sugar pyrophosphorylase; PDBTitle: protein structure of usp from l. major in apo-form Resolution 2.03 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.			.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.		.	.	.		.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																	.	.																	.				.
Query SS confidence																																	.	.																	.				.
Query Sequence		K	L	Y	P	V	V	M	A	G	G	S	G	S	R	L	W	P	L	S	R	V	L	Y	P	K	Q	F	L	C	L	K	.	.	G	D	L	T	M	L	Q	T	T	I	C	R	L	N	G	V	.	E	C	E	.	S	P	V	V	I	C	N	E	Q	H	R	F	I	V	A	E	Q	L	R	Q	L	N	K	L	T	E
Query Conservation																																	.	.																	.				.
Alig confidence																	.	.	.	.													.	.																	.				.
Template Conservation																	.	.	.	.
Template Sequence		K	T	V	F	V	L	V	A	G	G	L	G	E	R	L	.	.	.	.	G	Y	S	S	I	K	V	S	L	P	V	E	T	A	T	N	T	T	Y	L	A	Y	Y	L	R	W	A	Q	R	V	G	G	K	E	V	P	F	V	I	M	T	S	D	D	T	H	D	R	T	L	Q	L	L	R	E	L	Q	L	E	V	P
Template Known Secondary structure		G												G	G	G	.	.	.	.	T					G	G	G	S	B	S		T	T	T			B															T	T									T	T	T											T	T				T
Template Predicted Secondary structure																	.	.	.	.
Template SS confidence
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.					.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
		81	.	.																											.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100					.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.
Query Sequence		N	I	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	E	P	A	G	R	N	T	A	P	A	I	A	L	A	A	L	.	.	.	.	A	A	K	R	H	S	P	E	S	D	P	L	M	L	V	L	A	A	D	H	V	I	A	D	E	D	A	F	R	A
Query Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.																							.	.	.	.
Template Conservation																																																																										.	.	.	.
Template Sequence		N	L	H	V	L	K	Q	G	Q	V	F	C	F	A	D	S	A	A	H	L	A	L	D	E	T	G	K	L	L	R	K	P	H	G	H	G	D	V	H	S	L	I	Y	N	A	T	V	A	Q	P	L	V	N	D	W	L	A	A	G	Y	E	S	I	V	F	I	Q	D	T	N	A	G	.	.	.	.	A	T	I	T
Template Known Secondary structure		T												B	S	S	T	T			B		B		T	T	S	S	B							T	T										B				B								T	T									T	T	B	T	T	.	.	.	.
Template Predicted Secondary structure																																																																										.	.	.	.
Template SS confidence
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.					.	.	.	.
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.			.	.	.	.	.	.	.
Predicted Secondary structure																																																																									.	.
Query SS confidence																																																																									.	.
Query Sequence		A	V	R	N	A	M	P	Y	A	E	A	G	K	L	V	T	F	G	I	V	P	D	L	P	E	T	G	Y	G	Y	I	R	R	G	E	V	S	A	G	E	Q	D	M	V	A	F	E	V	A	Q	F	V	E	K	P	N	L	E	T	A	Q	A	Y	V	A	S	G	E	Y	Y	W	.	.	N	S	G	M	F	L	F
Query Conservation																																																																									.	.
Alig confidence																																							.	.	.	.	.																					.	.								.	.
Template Conservation																																							.	.	.	.	.																					.	.
Template Sequence		I	P	I	S	L	A	L	S	A	E	H	S	L	D	M	N	F	T	C	I	P	R	V	P	K	E	P	I	G	L	L	C	R	T	K	K	N	.	.	.	.	.	S	G	D	P	W	L	V	A	N	V	E	Y	N	V	F	A	E	V	S	R	.	.	A	L	G	F	S	P	F	P	G	S	V	N	T	L	V	F
Template Known Secondary structure												T	T		S										S	S		S	S								S	S	.	.	.	.	.	T	T	S																		.	.						S	S
Template Predicted Secondary structure																																							.	.	.	.	.																					.	.
Template SS confidence
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.						.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.			.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
		209	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	G	R	Y	L	E	E	L	K	K	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	L	S	S	Y	V	D	R	L	R	E	S
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		365	.	.	.	.	370	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions