 |
Job Description | P24174 | Confidence | 99.53% | Date | Thu Jan 5 11:40:50 GMT 2012 |
Rank | 62 | Aligned Residues | 94 |
% Identity | 21% | Template | c3l2hD_ |
PDB info |
PDB header:isomerase | Chain: D: PDB Molecule:putative sugar phosphate isomerase; |
PDBTitle: crystal structure of putative sugar phosphate isomerase (afe_0303)2 from acidithiobacillus ferrooxidans atcc 23270 at 1.85 a resolution
|
Resolution | 1.85 Å |
|
 |
  |   |
382 | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | |
400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | |
440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
| . |
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | D | R | Y | Q | V | K | R | I | T | V | K | P | G | E | G | L | S | . |
V | Q | M | H | H | H | R | A | E | H | W | V | V | V | A | G | T | A | K | V | T | I | D | G | D | I | K | L | L | G | E | N | E | S | I | Y | I | P | L | G | . |
A | T | H | C | L | E | N | P | G | K | I | P | L | D | L | I | E | V | R | S |
Query Conservation |   |
  |   |   |   |   |
|
|   |
|   |
|   |
|
|   |   |
|
| . |   |
|   |
|   |   |
|   |
|   |
|   |
|
|   |
|   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|
|   |
| . |   |   |
|   |
|   |
|   |
|   |   |   |
|   |   |
|
|
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |
|   |
|
|   |
|   |
|
|   |   |
|   |   |   |
|   |
|   |   |   |
|
|   |   |   |
|
|   |
|   |   |   |   |   |   |
|
|   |   |   |   |
|   |   |
|
|   |
|   |   |
|   |   |   |   |   |
|   |   |   |
|   |
|   |
|
|
|   |   |
|
|
|
|   |
Template Sequence |   |
L | R | H | X | G | I | H | L | I | Q | I | E | P | G | K | E | S | T | E | Y | H | L | H | H | Y | E | E | E | A | V | Y | V | L | S | G | K | G | T | L | T | X | E | N | D | Q | Y | P | I | A | P | G | D | F | V | G | F | P | C | H | A | A | A | H | S | I | S | N | D | G | T | E | T | L | V | C | L | V | I | G | Q |
Template Known Secondary structure |   |
| S | S |  |  |  |  |  |  |  |  |
| T | T |
| B | S | S | S | S | B |  |  | S | S |
|
|  |  |  |  |  |  |  | S |
|  |  |  |  |  | T | T |  |  |  |  |  |
| T | T |
|  |  |  |  |
| T | T | S |
|
|  |  |  |  |
|
| S | S | S |
|  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
42 | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . |
  |
  |   |
460 | . | . | . | . | . | . | . | . | . | 470 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | S | Y | L | E | E | D | D | V | V | R | F | A | D | R | Y | G | R | V |
Query Conservation |   |
|   |   |
|   |
|
|
|
|   |
|   |   |
|   |
|   |
|   |
Alig confidence |   |
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   | . | . | . |   |
|   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
R | L | D | . |
. |
. |
Q | D | V | V | D | Y | P | N | Q | H | K | R | L |
Template Known Secondary structure |   |
|
| S | . | . | . |  |  |  |  |  |  | T | T | T | T |  |  |  |
Template Predicted Secondary structure |   |
|
|
| . | . | . |
|
|  |  |  |  |
|
|
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
122 | . | . | |
|
|
. | . | . | . | . | 130 | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|