Job Description P24174 Confidence 99.71% Date Thu Jan 5 11:40:50 GMT 2012 Rank 41 Aligned Residues 216 % Identity 16% Template c2y6pC_ PDB info PDB header:transferase Chain: C: PDB Molecule:3-deoxy-manno-octulosonate cytidylyltransferase; PDBTitle: evidence for a two-metal-ion-mechanism in the2 kdo-cytidylyltransferase kdsb Resolution 2.10 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	V	M	A	G	G	S	G	S	R	L	W	P	L	S	R	V	L	Y	P	K	Q	F	L	C	L	K	G	D	L	T	M	L	Q	T	T	I	C	R	L	N	G	V	E	C	E	S	P	V	V	I	C	N	E	Q	H	R	F	I	V	A	E	Q	L	R	Q	L	N	K	L	T	E	N	I	I	L	E	P	A
Query Conservation
Alig confidence															.	.	.	.	.	.	.										.																																			.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.										.																																			.	.	.	.	.	.	.
Template Sequence		V	I	I	P	A	R	L	G	S	T	R	L	K	.	.	.	.	.	.	.	E	K	P	L	K	N	L	L	G	.	K	P	L	I	R	W	V	V	E	G	L	V	K	T	G	E	R	V	I	L	A	T	D	S	E	R	V	K	E	V	V	E	D	L	.	.	.	.	.	.	.	C	E	V	F	L	T	P	S	D
Template Known Secondary structure								S			S	S	S	T	.	.	.	.	.	.	.	T	G	G	G	S			T	T	.													T	T	T	S							S									T	T	T	.	.	.	.	.	.	.	S							T	T
Template Predicted Secondary structure															.	.	.	.	.	.	.										.																																			.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.								.	.	20	.	.	.	.	.	.		.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60								.	.	.	.	.	.	.	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	N	T	A	P	A	I	A	L	A	A	L	A	A	K	R	H	S	P	E	S	D	P	L	M	L	V	L	A	A	D	H	V	I	A	D	E	D	A	F	R	A	A	V	R	N	A	M	P	Y	A	E	A	G	K	L	V	T	F	G	I	V	P	D	L	P	E	T	G	Y	G	Y	I	R	R	G	E	V	S
Query Conservation
Alig confidence																	.	.	.	.	.	.																																		.
Template Conservation																	.	.	.	.	.	.																																		.
Template Sequence		L	P	S	G	S	D	R	V	L	Y	V	V	R	D	L	.	.	.	.	.	.	D	V	D	L	I	I	N	Y	Q	G	D	E	P	F	V	Y	E	E	D	I	K	L	I	F	R	E	L	E	K	G	E	R	V	.	V	T	L	A	R	K	D	K	E	A	Y	E	R	P	E	D	V	K	V	V	L	D	R	E	G
Template Known Secondary structure			S	S										T	T		.	.	.	.	.	.			S							T	T																			T		S		.								S	T	T	T	T		T	T	S							T	T	S
Template Predicted Secondary structure																	.	.	.	.	.	.																																		.
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.							.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.		.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	E	Q	D	M	V	A	F	E	V	A	Q	F	V	E	K	P	N	L	E	T	A	Q	A	Y	V	A	S	G	E	Y	Y	W	N	S	G	M	F	L	F	R	A	G	R	Y	L	E	E	L	K	K	Y	R	P	D	I	L	D	A	C	E	K	A	M	S	A	V	D	P	D	L	N	F	I	R	V	D	E	E
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.																					.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.																					.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	Y	A	L	Y	F	S	R	S	P	I	P	Y	F	R	K	N	D	T	F	Y	.	.	P	L	K	H	V	G	I	Y	G	F	R	K	E	T	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	B						S	S			S			S	S			S	S		.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.																					.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
											143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.			.	.	.	.	.	.	.	170	.	.	.	.	.	.	.																																		.
		248	.	250	.	.	.	.	.	.	.	.	.	260								.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.
Query Sequence		A	F	L	A	C	P	E	E	S	V	D	Y	A	.	.	.	.	.	.	.	V	M	E	R	T	A	D	A	V	V	V	P	M	D	A	G	W	S	D	V	G	S	W	S	S	L	W	E	I
Query Conservation															.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	F	G	A	M	P	P	S	K	L	E	Q	I	E	G	L	E	Q	L	R	L	L	E	N	G	I	K	I	K	V	L	I	T	E	N	Y	Y	H	G	V	D	T	E	E	D	L	K	I	V
Template Known Secondary structure					T	S										T		T							T	T										S							S
Template Predicted Secondary structure
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions