Job Description P24174 Confidence 99.81% Date Thu Jan 5 11:40:50 GMT 2012 Rank 34 Aligned Residues 210 % Identity 21% Template c2xwlB_ PDB info PDB header:transferase Chain: B: PDB Molecule:2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase; PDBTitle: crystal structure of ispd from mycobacterium smegmatis in complex2 with ctp and mg Resolution 1.49 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.		.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																																																.
Query SS confidence																																																.
Query Sequence		Y	P	V	V	M	A	G	G	S	G	S	R	L	W	P	L	S	R	V	L	Y	P	K	Q	F	L	C	L	K	G	D	L	T	M	L	Q	T	T	I	C	R	L	N	G	V	E	.	C	E	S	P	V	V	I	C	N	E	Q	H	R	F	I	V	A	E	Q	L	R	Q	L	N	K	L	T	E	N	I	I	L	E
Query Conservation																																																.
Alig confidence															.	.	.	.														.																.																								.	.	.	.	.
Template Conservation															.	.	.	.														.																																								.	.	.	.	.
Template Sequence		V	A	V	V	P	A	A	G	S	G	E	R	L	.	.	.	.	R	A	G	R	P	K	A	F	V	T	L	G	G	.	T	P	L	L	E	H	A	L	S	G	L	R	A	S	G	V	I	D	R	I	V	I	A	V	P	P	A	L	T	D	E	S	K	L	V	F	G	G	E	.	.	.	.	.	D	S	V	I	V
Template Known Secondary structure												T	T	T	.	.	.	.	T	S	S	S		G	G	G	S			T	T	.														T	S											G	G	G										B	T	.	.	.	.	.	T
Template Predicted Secondary structure															.	.	.	.														.																																								.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.					.	.	.	20	.	.	.	.	.	.	.	.	.		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.						.	70	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	G	R	N	T	A	P	A	I	A	L	A	A	L	A	A	K	R	H	S	P	E	S	D	P	L	M	L	V	L	A	A	D	H	V	I	A	D	E	D	A	F	R	A	A	V	R	N	A	M	P	Y	A	E	A	G	K	L	V	T	F	G	I	V	P	D	L	P	E	T	G	Y	G	Y	I	R	R	G	E
Query Conservation
Alig confidence																			.	.	.	.	.																														.	.	.																.	.	.	.	.
Template Conservation																			.	.	.	.	.																														.	.	.																.	.	.	.	.
Template Sequence		S	G	G	V	D	R	T	E	S	V	A	L	A	L	E	A	A	.	.	.	.	.	G	D	A	E	F	V	L	V	H	D	A	A	R	A	L	T	P	P	A	L	I	A	R	V	V	A	A	L	K	.	.	.	E	G	H	S	A	V	V	P	G	L	A	P	A	D	T	.	.	.	.	.	I	K	A	V	D	A
Template Known Secondary structure					S	S										T	T	S	.	.	.	.	.		S		S							T	T		T	T															.	.	.		T		S									S	S		.	.	.	.	.						T
Template Predicted Secondary structure																			.	.	.	.	.																														.	.	.																.	.	.	.	.
Template SS confidence
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90						.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.				120	.	.	.	.	.	.	.	.	.	130	.	.	.	.						.	.	.	.	.	140
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	A	G	E	Q	D	M	V	A	F	E	V	A	Q	F	V	E	K	P	N	L	E	T	A	Q	A	Y	V	A	S	G	E	Y	Y	W	N	S	G	M	F	L	F	R	A	G	R	Y	L	E	E	L	K	K	Y	R	P	D	I	L	D	A	C	E	K	A	M	S	A	V	D	P	D	L	N	F	I	R	V	D
Query Conservation
Alig confidence				.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	G	.	.	.	.	.	.	.	.	.	A	V	L	G	T	P	E	R	A	G	.	.	.	.	.	.	.	.	.	.	.	.	L	R	A	V	Q	T	P	Q	G	F	H	A	D	V	L	R	R	A	Y	A	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	T	A	G	G	V	T	D	D
Template Known Secondary structure		T	S	.	.	.	.	.	.	.	.	.								G	G	G	.	.	.	.	.	.	.	.	.	.	.	.						S														T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	S	S
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		141	.										.	.	.	.	.	.	.	150	.	.													.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.																		.	.	.	.	.	.	180	.	.
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	E	A	F	L	A	C	P	E	E	S	V	D	Y	A	V	M	E	R	T	A	D	A	V	V	V	P	M	D	A	G	W	S	D	V	G	S	W	S	S	L	W	E	I
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	S	L	V	E	Q	.	.	.	.	.	.	.	.	.	.	.	.	L	G	T	P	V	Q	I	V	D	G	D	P	L	A	F	K	I	T	T	P	L	D	L	V	L	A
Template Known Secondary structure							T	.	.	.	.	.	.	.	.	.	.	.	.	T	T										G	G	G					S
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		183	.	.	.	.	.													.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions