Job Description P24174 Confidence 100.00% Date Thu Jan 5 11:40:50 GMT 2012 Rank 1 Aligned Residues 329 % Identity 40% Template c2x5sB_ PDB info PDB header:transferase Chain: B: PDB Molecule:mannose-1-phosphate guanylyltransferase; PDBTitle: crystal structure of t. maritima gdp-mannose2 pyrophosphorylase in apo state. Resolution 2.35 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50		.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																																															.
Query SS confidence																																															.
Query Sequence		L	Y	P	V	V	M	A	G	G	S	G	S	R	L	W	P	L	S	R	V	L	Y	P	K	Q	F	L	C	L	K	G	D	L	T	M	L	Q	T	T	I	C	R	L	N	G	.	V	E	C	E	S	P	V	V	I	C	N	E	Q	H	R	F	I	V	A	E	Q	L	R	Q	L	N	K	L	T	E	N	I	I	L
Query Conservation																																															.
Alig confidence																																															.																											.	.
Template Conservation																																																																										.	.
Template Sequence		M	K	A	L	I	L	A	G	G	S	G	E	R	F	W	P	L	S	T	P	E	T	P	K	Q	F	L	K	L	F	G	N	K	S	L	M	R	W	T	F	E	R	V	L	E	E	M	D	P	K	D	V	I	V	V	T	H	K	D	Y	V	E	R	T	K	K	E	L	P	E	L	P	.	.	D	E	N	I	I	A
Template Known Secondary structure												G	G	G	G	T	T	T		B	T	T	B		G	G	G				B	T	T	B											T	T	T			G	G	G																		T	T	S		.	.	G	G	G
Template Predicted Secondary structure																																																																										.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.			.	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.		.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure																																																											.
Query SS confidence																																																											.
Query Sequence		E	P	A	G	R	N	T	A	P	A	I	A	L	A	A	L	A	A	K	R	H	S	P	E	S	D	P	L	M	L	V	L	A	A	D	H	V	I	A	D	E	D	A	F	R	A	A	V	R	N	A	M	P	Y	A	E	A	.	G	K	L	V	T	F	G	I	V	P	D	L	P	E	T	G	Y	G	Y	I	R	R
Query Conservation																																																											.
Alig confidence																				.	.	.	.	.																																			.
Template Conservation																				.	.	.	.	.
Template Sequence		E	P	M	K	K	N	T	A	P	A	C	F	I	G	T	K	L	A	.	.	.	.	.	D	D	D	E	P	V	L	V	L	P	A	D	H	R	I	P	D	T	K	K	F	W	K	T	V	K	K	A	L	D	A	L	E	K	Y	D	G	L	F	T	F	G	I	V	P	T	R	P	E	T	G	Y	G	Y	I	E	I
Template Known Secondary structure			S	S													T	T	S	.	.	.	.	.		T	T								S	S		B																							S									S	S			S	S	S
Template Predicted Secondary structure																				.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.						.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	E	V	S	A	G	E	Q	D	M	V	A	F	E	V	A	Q	F	V	E	K	P	N	L	E	T	A	Q	A	Y	V	A	S	G	E	Y	Y	W	N	S	G	M	F	L	F	R	A	G	R	Y	L	E	E	L	K	K	Y	R	P	D	I	L	D	A	C	E	K	A	M	S	A	V	D	P	D	L	N	F	I	R
Query Conservation
Alig confidence								.	.	.	.																																																											.	.	.	.	.	.
Template Conservation								.	.	.	.																																																											.	.	.	.	.	.
Template Sequence		G	E	E	L	E	E	.	.	.	.	G	V	H	K	V	A	Q	F	R	E	K	P	D	L	E	T	A	K	K	F	V	E	S	G	R	F	L	W	N	S	G	M	F	L	W	K	A	R	E	F	I	E	E	V	K	V	C	E	P	S	I	Y	E	N	L	K	D	V	.	.	.	.	.	.	D	P	R	N	F	E
Template Known Secondary structure							T	.	.	.	.	T										S													T																																T	T		.	.	.	.	.	.		S	S
Template Predicted Secondary structure								.	.	.	.																																																											.	.	.	.	.	.
Template SS confidence
		155	.	.	.	.	160					.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.							.	220	.	.	.	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	E	E	A	F	L	A	C	P	E	E	S	V	D	Y	A	V	M	E	R	T	A	D	A	V	V	V	P	M	D	A	G	W	S	D	V	G	S	W	S	S	L	W	E	I	S	A	H	T	A	E	G	N	V	C	H	G	D	V	I	N	H	K	T	E	N	S	Y	V	Y	A	E	S	G	L	V	T	T	V
Query Conservation
Alig confidence																																																								.	.	.	.
Template Conservation																																																								.	.	.	.
Template Sequence		E	L	K	K	A	Y	E	K	V	P	S	I	S	V	D	Y	A	V	M	E	K	S	K	K	V	R	V	V	K	A	D	F	E	W	S	D	L	G	N	W	S	S	V	R	E	I	E	G	Y	T	E	E	S	D	.	.	.	.	E	V	I	L	V	D	S	D	R	V	F	V	K	T	H	N	K	P	I	A	V	V
Template Known Secondary structure										S									T	T	T	T		S									S			B				S										S					S	.	.	.	.	S					S			S						S	S	S
Template Predicted Secondary structure																																																								.	.	.	.
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.					.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	K	D	L	V	V	V	Q	T	K	D	A	V	L	I	A	D	R	N	A	V	Q	D	V	K	K	V	V	E	Q	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	L	S	D	V	I	V	I	D	T	P	N	G	I	L	I	C	K	E	E	Y	A	Q	K	V	R	E	V	V	K	K	L
Template Known Secondary structure		S			S							T	T							G	G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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