Job Description P24174 Confidence 74.72% Date Thu Jan 5 11:40:50 GMT 2012 Rank 209 Aligned Residues 171 % Identity 12% Template c1xhbA_ PDB info PDB header:transferase Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 1; PDBTitle: the crystal structure of udp-galnac: polypeptide alpha-n-2 acetylgalactosaminyltransferase-t1 Resolution 2.50 Å

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		32	.	.	.	.	.	.		.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.					.	.	.	.	.					60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure									.																	.	.	.	.						.	.	.	.
Query SS confidence									.																	.	.	.	.						.	.	.	.
Query Sequence		L	C	L	K	G	D	L	.	T	M	L	Q	T	T	I	C	R	L	N	G	V	E	C	E	.	.	.	.	S	P	V	V	I	.	.	.	.	C	N	E	Q	H	R	F	I	V	A	E	Q	L	R	Q	L	N	K	L	T	E	N	I	I	L	E	P	A	G	R	N	T	A	P	A	I	A	L	A	A	L	A	A
Query Conservation									.																	.	.	.	.						.	.	.	.
Alig confidence									.																	.	.	.	.						.	.	.	.																			.
Template Conservation																																																									.
Template Sequence		I	V	F	H	N	E	A	W	S	T	L	L	R	T	V	H	S	V	I	N	R	S	P	R	H	M	I	E	E	I	V	L	V	D	D	A	S	E	R	D	F	L	K	R	P	L	E	S	Y	V	K	K	L	K	V	.	P	V	H	V	I	R	M	E	Q	R	S	G	L	I	R	A	R	L	K	G	A	A	V	S
Template Known Secondary structure					S	S																S	S		G	G	G										S				G	G	G	T									S	S	S	S	.								S	S
Template Predicted Secondary structure																																																									.
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.		.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	R	H	S	P	E	S	D	P	L	M	L	V	L	A	A	D	H	V	I	A	D	E	D	A	F	R	A	A	V	R	N	A	M	P	Y	A	E	A	G	K	L	V	T	F	G	I	V	P	D	L	P	E	T	G	Y	G	Y	I	R	R	G	E	V	S	A	G	E	Q	D	M	V	A	F	E	V	A	Q	F	V
Query Conservation
Alig confidence			.	.	.	.	.	.														.														.	.	.																																					.	.
Template Conservation			.	.	.	.	.	.														.														.	.	.																																					.	.
Template Sequence		R	.	.	.	.	.	.	G	Q	V	I	T	F	L	D	A	H	C	E	C	.	T	A	G	W	L	E	P	L	L	A	R	I	K	.	.	.	H	D	R	R	T	V	V	C	P	I	I	D	V	I	S	D	D	T	F	E	Y	M	A	G	S	D	M	T	Y	G	G	F	N	W	K	L	.	.	N	F	R	W	Y
Template Known Secondary structure			.	.	.	.	.	.	S	S							S	S				.		T	T											.	.	.			T	T												S	S	S								T	T							T	T		.	.
Template Predicted Secondary structure			.	.	.	.	.	.														.														.	.	.																																					.	.
Template SS confidence
		201							.	.	.	.	.	.	.	.	210	.	.	.	.		.	.	.	.	.	220	.	.	.	.	.	.	.				.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.			.	.	.	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200					.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.
Query SS confidence																				.	.	.	.
Query Sequence		E	K	P	N	L	E	T	A	Q	A	Y	V	A	S	G	E	Y	Y	.	.	.	.	W	N	S	G	M	F	L	F	R	A	G	R	Y	L	E
Query Conservation																				.	.	.	.
Alig confidence																				.	.	.	.
Template Conservation
Template Sequence		P	V	P	Q	R	E	M	D	R	R	K	G	D	R	T	L	P	V	R	T	P	T	M	A	G	G	L	F	S	I	D	R	D	Y	F	Q	E
Template Known Secondary structure											T	T	T		T	T	S					S	B			S	S	S
Template Predicted Secondary structure
Template SS confidence
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions