Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	Y	H	Q	Y	Y	P	V	D	I	V	N	G	P	G	T	R	C	T	L	F	V	S	G	C	V	H	E	C	P	G	C	Y	N	K	S	T	W	R	V	N	S	G	Q	P	F	T	K	A	M	E	D	Q	I	I	N	D	L	N
Secondary structure
SS confidence
Disorder		?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		D	T	R	I	K	R	Q	G	I	S	L	S	G	G	D	P	L	H	P	Q	N	V	P	D	I	L	K	L	V	Q	R	I	R	A	E	C	P	G	K	D	I	W	V	W	T	G	Y	K	L	D	E	L	N	A	A	Q	M	Q	V	V
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Sequence		D	L	I	N	V	L	V	D	G	K	F	V	Q	D	L	K	D	P	S	L	I	W	R	G	S	S	N	Q	V	V	H	H	L	R
Secondary structure
SS confidence
Disorder																																		?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3c8f chain A Region: 2 - 129 Aligned: 126 Modelled: 128 Confidence: 99.9% Identity: 20% PDB header:oxidoreductase Chain: A: PDB Molecule:pyruvate formate-lyase 1-activating enzyme; PDBTitle: 4fe-4s-pyruvate formate-lyase activating enzyme with2 partially disordered adomet Phyre2 PDB 1tv8 chain A Region: 18 - 154 Aligned: 131 Modelled: 137 Confidence: 99.5% Identity: 19% Fold: TIM beta/alpha-barrel Superfamily: Radical SAM enzymes Family: MoCo biosynthesis proteins Phyre2 PDB 2yx0 chain A Region: 23 - 150 Aligned: 123 Modelled: 128 Confidence: 99.5% Identity: 12% PDB header:metal binding protein Chain: A: PDB Molecule:radical sam enzyme; PDBTitle: crystal structure of p. horikoshii tyw1 Phyre2 PDB 3rfa chain A Region: 4 - 130 Aligned: 123 Modelled: 125 Confidence: 99.1% Identity: 14% PDB header:oxidoreductase Chain: A: PDB Molecule:ribosomal rna large subunit methyltransferase n; PDBTitle: x-ray structure of rlmn from escherichia coli in complex with s-2 adenosylmethionine Phyre2 PDB 2z2u chain A Region: 26 - 142 Aligned: 110 Modelled: 117 Confidence: 98.8% Identity: 10% PDB header:metal binding protein Chain: A: PDB Molecule:upf0026 protein mj0257; PDBTitle: crystal structure of archaeal tyw1 Phyre2 PDB 2a5h chain C Region: 11 - 121 Aligned: 108 Modelled: 109 Confidence: 98.8% Identity: 14% PDB header:isomerase Chain: C: PDB Molecule:l-lysine 2,3-aminomutase; PDBTitle: 2.1 angstrom x-ray crystal structure of lysine-2,3-aminomutase from2 clostridium subterminale sb4, with michaelis analog (l-alpha-lysine3 external aldimine form of pyridoxal-5'-phosphate). Phyre2 PDB 3can chain A Region: 66 - 129 Aligned: 61 Modelled: 64 Confidence: 98.5% Identity: 15% PDB header:lyase activator Chain: A: PDB Molecule:pyruvate-formate lyase-activating enzyme; PDBTitle: crystal structure of a domain of pyruvate-formate lyase-activating2 enzyme from bacteroides vulgatus atcc 8482 Phyre2 PDB 1r30 chain A Region: 19 - 119 Aligned: 97 Modelled: 101 Confidence: 98.1% Identity: 11% Fold: TIM beta/alpha-barrel Superfamily: Radical SAM enzymes Family: Biotin synthase Phyre2 PDB 1r30 chain A Region: 19 - 119 Aligned: 97 Modelled: 101 Confidence: 98.1% Identity: 11% PDB header:transferase Chain: A: PDB Molecule:biotin synthase; PDBTitle: the crystal structure of biotin synthase, an s-2 adenosylmethionine-dependent radical enzyme Phyre2 PDB 3t7v chain A Region: 17 - 128 Aligned: 109 Modelled: 112 Confidence: 98.0% Identity: 16% PDB header:transferase Chain: A: PDB Molecule:methylornithine synthase pylb; PDBTitle: crystal structure of methylornithine synthase (pylb) Phyre2 PDB 3cix chain A Region: 17 - 118 Aligned: 97 Modelled: 102 Confidence: 97.9% Identity: 15% PDB header:adomet binding protein Chain: A: PDB Molecule:fefe-hydrogenase maturase; PDBTitle: x-ray structure of the [fefe]-hydrogenase maturase hyde from2 thermotoga maritima in complex with thiocyanate Phyre2 PDB 1olt chain A Region: 15 - 141 Aligned: 124 Modelled: 127 Confidence: 97.2% Identity: 15% Fold: TIM beta/alpha-barrel Superfamily: Radical SAM enzymes Family: Oxygen-independent coproporphyrinogen III oxidase HemN Phyre2 PDB 1lbu chain A domain 2 Region: 71 - 107 Aligned: 37 Modelled: 37 Confidence: 33.4% Identity: 27% Fold: Hedgehog/DD-peptidase Superfamily: Hedgehog/DD-peptidase Family: Muramoyl-pentapeptide carboxypeptidase Phyre2 PDB 2klx chain A Region: 14 - 33 Aligned: 17 Modelled: 20 Confidence: 30.9% Identity: 41% PDB header:oxidoreductase Chain: A: PDB Molecule:glutaredoxin; PDBTitle: solution structure of glutaredoxin from bartonella henselae str.2 houston Phyre2 PDB 2hl7 chain A Region: 28 - 61 Aligned: 32 Modelled: 34 Confidence: 28.1% Identity: 28% PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c-type biogenesis protein ccmh; PDBTitle: crystal structure of the periplasmic domain of ccmh from pseudomonas2 aeruginosa Phyre2 PDB 2qgq chain F Region: 30 - 124 Aligned: 90 Modelled: 90 Confidence: 27.8% Identity: 17% PDB header:structural genomics, unknown function Chain: F: PDB Molecule:protein tm_1862; PDBTitle: crystal structure of tm_1862 from thermotoga maritima.2 northeast structural genomics consortium target vr77 Phyre2 PDB 2kw0 chain A Region: 27 - 61 Aligned: 33 Modelled: 35 Confidence: 26.8% Identity: 18% PDB header:oxidoreductase Chain: A: PDB Molecule:ccmh protein; PDBTitle: solution structure of n-terminal domain of ccmh from escherichia.coli Phyre2 PDB 2kl5 chain A Region: 26 - 32 Aligned: 7 Modelled: 7 Confidence: 25.7% Identity: 29% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein yutd; PDBTitle: solution nmr structure of protein yutd from b.subtilis, northeast2 structural genomics consortium target sr232 Phyre2 PDB 3gv1 chain A Region: 9 - 33 Aligned: 23 Modelled: 25 Confidence: 25.2% Identity: 30% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:disulfide interchange protein; PDBTitle: crystal structure of disulfide interchange protein from neisseria2 gonorrhoeae Phyre2 PDB 3kc2 chain A Region: 66 - 122 Aligned: 52 Modelled: 57 Confidence: 24.0% Identity: 10% PDB header:hydrolase Chain: A: PDB Molecule:uncharacterized protein ykr070w; PDBTitle: crystal structure of mitochondrial had-like phosphatase from2 saccharomyces cerevisiae Phyre2 1 c3c8fA_ 2 d1tv8a_ 3 c2yx0A_ 4 c3rfaA_ 5 c2z2uA_ 6 c2a5hC_ 7 c3canA_ 8 d1r30a_ 9 c1r30A_ 10 c3t7vA_ 11 c3cixA_ 12 d1olta_ 13 d1lbua2 14 c2klxA_ 15 c2hl7A_ 16 c2qgqF_ 17 c2kw0A_ 18 c2kl5A_ 19 c3gv1A_ 20 c3kc2A_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3c8fA_ 99.9 20 PDB header:oxidoreductase Chain: A: PDB Molecule:pyruvate formate-lyase 1-activating enzyme; PDBTitle: 4fe-4s-pyruvate formate-lyase activating enzyme with2 partially disordered adomet 2 d1tv8a_ 99.5 19 Fold:TIM beta/alpha-barrel Superfamily:Radical SAM enzymes Family:MoCo biosynthesis proteins 3 c2yx0A_ 99.5 12 PDB header:metal binding protein Chain: A: PDB Molecule:radical sam enzyme; PDBTitle: crystal structure of p. horikoshii tyw1 4 c3rfaA_ 99.1 14 PDB header:oxidoreductase Chain: A: PDB Molecule:ribosomal rna large subunit methyltransferase n; PDBTitle: x-ray structure of rlmn from escherichia coli in complex with s-2 adenosylmethionine 5 c2z2uA_ 98.8 10 PDB header:metal binding protein Chain: A: PDB Molecule:upf0026 protein mj0257; PDBTitle: crystal structure of archaeal tyw1 6 c2a5hC_ 98.8 14 PDB header:isomerase Chain: C: PDB Molecule:l-lysine 2,3-aminomutase; PDBTitle: 2.1 angstrom x-ray crystal structure of lysine-2,3-aminomutase from2 clostridium subterminale sb4, with michaelis analog (l-alpha-lysine3 external aldimine form of pyridoxal-5'-phosphate). 7 c3canA_ 98.5 15 PDB header:lyase activator Chain: A: PDB Molecule:pyruvate-formate lyase-activating enzyme; PDBTitle: crystal structure of a domain of pyruvate-formate lyase-activating2 enzyme from bacteroides vulgatus atcc 8482 8 d1r30a_ 98.1 11 Fold:TIM beta/alpha-barrel Superfamily:Radical SAM enzymes Family:Biotin synthase 9 c1r30A_ 98.1 11 PDB header:transferase Chain: A: PDB Molecule:biotin synthase; PDBTitle: the crystal structure of biotin synthase, an s-2 adenosylmethionine-dependent radical enzyme 10 c3t7vA_ 98.0 16 PDB header:transferase Chain: A: PDB Molecule:methylornithine synthase pylb; PDBTitle: crystal structure of methylornithine synthase (pylb) 11 c3cixA_ 97.9 15 PDB header:adomet binding protein Chain: A: PDB Molecule:fefe-hydrogenase maturase; PDBTitle: x-ray structure of the [fefe]-hydrogenase maturase hyde from2 thermotoga maritima in complex with thiocyanate 12 d1olta_ 97.2 15 Fold:TIM beta/alpha-barrel Superfamily:Radical SAM enzymes Family:Oxygen-independent coproporphyrinogen III oxidase HemN 13 d1lbua2 33.4 27 Fold:Hedgehog/DD-peptidase Superfamily:Hedgehog/DD-peptidase Family:Muramoyl-pentapeptide carboxypeptidase 14 c2klxA_ 30.9 41 PDB header:oxidoreductase Chain: A: PDB Molecule:glutaredoxin; PDBTitle: solution structure of glutaredoxin from bartonella henselae str.2 houston 15 c2hl7A_ 28.1 28 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c-type biogenesis protein ccmh; PDBTitle: crystal structure of the periplasmic domain of ccmh from pseudomonas2 aeruginosa 16 c2qgqF_ 27.8 17 PDB header:structural genomics, unknown function Chain: F: PDB Molecule:protein tm_1862; PDBTitle: crystal structure of tm_1862 from thermotoga maritima.2 northeast structural genomics consortium target vr77 17 c2kw0A_ 26.8 18 PDB header:oxidoreductase Chain: A: PDB Molecule:ccmh protein; PDBTitle: solution structure of n-terminal domain of ccmh from escherichia.coli 18 c2kl5A_ 25.7 29 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein yutd; PDBTitle: solution nmr structure of protein yutd from b.subtilis, northeast2 structural genomics consortium target sr232 19 c3gv1A_ 25.2 30 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:disulfide interchange protein; PDBTitle: crystal structure of disulfide interchange protein from neisseria2 gonorrhoeae 20 c3kc2A_ 24.0 10 PDB header:hydrolase Chain: A: PDB Molecule:uncharacterized protein ykr070w; PDBTitle: crystal structure of mitochondrial had-like phosphatase from2 saccharomyces cerevisiae 21 c3gn3B_ not modelled 21.3 23 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative protein-disulfide isomerase; PDBTitle: crystal structure of a putative protein-disulfide isomerase from2 pseudomonas syringae to 2.5a resolution. 22 c3h93A_ not modelled 19.0 22 PDB header:transcription regulator Chain: A: PDB Molecule:thiol:disulfide interchange protein dsba; PDBTitle: crystal structure of pseudomonas aeruginosa dsba 23 c3dvwA_ not modelled 17.6 22 PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsba; PDBTitle: crystal structure of reduced dsba1 from neisseria2 meningitidis 24 c2k0rA_ not modelled 16.9 19 PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbd; PDBTitle: solution structure of the c103s mutant of the n-terminal2 domain of dsbd from neisseria meningitidis 25 c1v57A_ not modelled 16.6 24 PDB header:isomerase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbg; PDBTitle: crystal structure of the disulfide bond isomerase dsbg 26 c2k9hA_ not modelled 16.5 38 PDB header:metal binding protein Chain: A: PDB Molecule:glycoprotein; PDBTitle: the hantavirus glycoprotein g1 tail contains a dual cchc-2 type classical zinc fingers 27 c3l9vE_ not modelled 16.4 31 PDB header:oxidoreductase Chain: E: PDB Molecule:putative thiol-disulfide isomerase or thioredoxin; PDBTitle: crystal structure of salmonella enterica serovar typhimurium srga 28 d2atcb2 not modelled 16.2 33 Fold:Rubredoxin-like Superfamily:Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain Family:Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain 29 c2l7xA_ not modelled 16.1 40 PDB header:viral protein Chain: A: PDB Molecule:envelope glycoprotein; PDBTitle: crimean congo hemorrhagic fever gn zinc finger 30 c3ct7E_ not modelled 16.0 15 PDB header:isomerase Chain: E: PDB Molecule:d-allulose-6-phosphate 3-epimerase; PDBTitle: crystal structure of d-allulose 6-phosphate 3-epimerase2 from escherichia coli k-12 31 c3c7mB_ not modelled 15.5 23 PDB header:oxidoreductase Chain: B: PDB Molecule:thiol:disulfide interchange protein dsba-like; PDBTitle: crystal structure of reduced dsbl 32 c3feuA_ not modelled 14.3 22 PDB header:oxidoreductase Chain: A: PDB Molecule:putative lipoprotein; PDBTitle: crystal structure of dsba-like thioredoxin domain vf_a0457 from vibrio2 fischeri 33 c1nl0G_ not modelled 14.1 50 PDB header:immune system Chain: G: PDB Molecule:factor ix; PDBTitle: crystal structure of human factor ix gla domain in complex2 of an inhibitory antibody, 10c12 34 c3cu2A_ not modelled 14.0 11 PDB header:isomerase Chain: A: PDB Molecule:ribulose-5-phosphate 3-epimerase; PDBTitle: crystal structure of ribulose-5-phosphate 3-epimerase (yp_718263.1)2 from haemophilus somnus 129pt at 1.91 a resolution 35 d1vsra_ not modelled 13.4 42 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Very short patch repair (VSR) endonuclease 36 d1beda_ not modelled 13.3 22 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbA-like 37 d1ckqa_ not modelled 13.2 22 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Restriction endonuclease EcoRI 38 d2fzcb2 not modelled 13.2 33 Fold:Rubredoxin-like Superfamily:Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain Family:Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain 39 d1abaa_ not modelled 13.1 20 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 40 d1eysc_ not modelled 13.0 22 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Photosynthetic reaction centre (cytochrome subunit) 41 c1eysC_ not modelled 13.0 22 PDB header:electron transport Chain: C: PDB Molecule:photosynthetic reaction center; PDBTitle: crystal structure of photosynthetic reaction center from a2 thermophilic bacterium, thermochromatium tepidum 42 c2znmA_ not modelled 12.6 19 PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsba; PDBTitle: oxidoreductase nmdsba3 from neisseria meningitidis 43 c2khpA_ not modelled 12.4 35 PDB header:electron transport Chain: A: PDB Molecule:glutaredoxin; PDBTitle: solution structure of glutaredoxin from brucella melitensis 44 d1egoa_ not modelled 12.3 31 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 45 c2bpbB_ not modelled 12.3 12 PDB header:oxidoreductase Chain: B: PDB Molecule:sulfite\:cytochrome c oxidoreductase subunit b; PDBTitle: sulfite dehydrogenase from starkeya novella 46 c2he3A_ not modelled 12.1 16 PDB header:oxidoreductase Chain: A: PDB Molecule:glutathione peroxidase 2; PDBTitle: crystal structure of the selenocysteine to cysteine mutant of human2 glutathionine peroxidase 2 (gpx2) 47 d1pg5b2 not modelled 12.0 33 Fold:Rubredoxin-like Superfamily:Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain Family:Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain 48 d2i5nc1 not modelled 11.4 12 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Photosynthetic reaction centre (cytochrome subunit) 49 c2jblC_ not modelled 11.4 12 PDB header:electron transport Chain: C: PDB Molecule:photosynthetic reaction center cytochrome c PDBTitle: photosynthetic reaction center from blastochloris viridis 50 d1wjpa2 not modelled 11.1 30 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 51 c2be7E_ not modelled 10.5 33 PDB header:transferase Chain: E: PDB Molecule:aspartate carbamoyltransferase regulatory chain; PDBTitle: crystal structure of the unliganded (t-state) aspartate2 transcarbamoylase of the psychrophilic bacterium moritella profunda 52 d1t3ba1 not modelled 9.3 29 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbC/DsbG C-terminal domain-like 53 d1h75a_ not modelled 9.2 14 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 54 d3c7bb3 not modelled 9.2 20 Fold:Nitrite and sulphite reductase 4Fe-4S domain-like Superfamily:Nitrite and sulphite reductase 4Fe-4S domain-like Family:Nitrite and sulphite reductase 4Fe-4S domain-like 55 c2e2zA_ not modelled 9.0 13 PDB header:protein transport, chaperone regulator Chain: A: PDB Molecule:tim15; PDBTitle: solution nmr structure of yeast tim15, co-chaperone of2 mitochondrial hsp70 56 d1x5wa2 not modelled 8.9 29 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 57 c3gr7A_ not modelled 8.5 11 PDB header:oxidoreductase Chain: A: PDB Molecule:nadph dehydrogenase; PDBTitle: structure of oye from geobacillus kaustophilus, hexagonal2 crystal form 58 d1atxa_ not modelled 8.5 39 Fold:Defensin-like Superfamily:Defensin-like Family:Defensin 59 c3kwpA_ not modelled 8.2 15 PDB header:transferase Chain: A: PDB Molecule:predicted methyltransferase; PDBTitle: crystal structure of putative methyltransferase from lactobacillus2 brevis 60 d2hfqa1 not modelled 8.1 43 Fold:NE1680-like Superfamily:NE1680-like Family:NE1680-like 61 c2hfqA_ not modelled 8.1 43 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: nmr structure of protein ne1680 from nitrosomonas europaea:2 northeast structural genomics consortium target net5 62 d1pbya1 not modelled 8.1 17 Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 63 d1eeja1 not modelled 8.0 25 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbC/DsbG C-terminal domain-like 64 c2elpA_ not modelled 8.0 50 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 406; PDBTitle: solution structure of the 13th c2h2 zinc finger of human2 zinc finger protein 406 65 d2akja3 not modelled 7.9 25 Fold:Nitrite and sulphite reductase 4Fe-4S domain-like Superfamily:Nitrite and sulphite reductase 4Fe-4S domain-like Family:Nitrite and sulphite reductase 4Fe-4S domain-like 66 c2remB_ not modelled 7.8 21 PDB header:oxidoreductase Chain: B: PDB Molecule:disulfide oxidoreductase; PDBTitle: crystal structure of oxidoreductase dsba from xylella2 fastidiosa 67 d1cw0a_ not modelled 7.8 42 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Very short patch repair (VSR) endonuclease 68 c3bciA_ not modelled 7.6 33 PDB header:oxidoreductase Chain: A: PDB Molecule:disulfide bond protein a; PDBTitle: crystal structure of staphylococcus aureus dsba 69 d1z6ma1 not modelled 7.6 38 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbA-like 70 c3omzG_ not modelled 7.5 25 PDB header:immune system Chain: G: PDB Molecule:human vdelta1 gamma delta t cell receptor delta1a/b-3; PDBTitle: crystal structure of mica-specific human gamma delta t cell receptor 71 c3hf3A_ not modelled 7.3 11 PDB header:oxidoreductase Chain: A: PDB Molecule:chromate reductase; PDBTitle: old yellow enzyme from thermus scotoductus sa-01 72 d1uxja1 not modelled 7.3 18 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like 73 d1r7ha_ not modelled 7.2 13 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 74 c1u83A_ not modelled 7.2 15 PDB header:lyase Chain: A: PDB Molecule:phosphosulfolactate synthase; PDBTitle: psl synthase from bacillus subtilis 75 d1u83a_ not modelled 7.2 15 Fold:TIM beta/alpha-barrel Superfamily:(2r)-phospho-3-sulfolactate synthase ComA Family:(2r)-phospho-3-sulfolactate synthase ComA 76 d2ouwa1 not modelled 7.1 17 Fold:AhpD-like Superfamily:AhpD-like Family:TTHA0727-like 77 c1i7mD_ not modelled 7.0 18 PDB header:lyase Chain: D: PDB Molecule:s-adenosylmethionine decarboxylase beta chain; PDBTitle: human s-adenosylmethionine decarboxylase with covalently bound2 pyruvoyl group and complexed with 4-amidinoindan-1-one-2'-3 amidinohydrazone 78 d1vkea_ not modelled 7.0 11 Fold:AhpD-like Superfamily:AhpD-like Family:CMD-like 79 c2w95B_ not modelled 6.9 11 PDB header:cell adhesion Chain: B: PDB Molecule:discoidin-1 subunit a; PDBTitle: structure of the discoidin i from dictyostelium discoideum2 in complex with galnac at 1.75 angstrom resolution 80 d1fova_ not modelled 6.9 23 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 81 d1jmxa1 not modelled 6.7 19 Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 82 d1aopa4 not modelled 6.5 40 Fold:Nitrite and sulphite reductase 4Fe-4S domain-like Superfamily:Nitrite and sulphite reductase 4Fe-4S domain-like Family:Nitrite and sulphite reductase 4Fe-4S domain-like 83 d1un2a_ not modelled 6.5 36 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbA-like 84 d1fvka_ not modelled 6.4 36 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbA-like 85 d1dl6a_ not modelled 6.3 15 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 86 d1tzaa_ not modelled 6.3 39 Fold:Immunoglobulin-like beta-sandwich Superfamily:ApaG-like Family:ApaG-like 87 d2v4jb3 not modelled 6.2 18 Fold:Nitrite and sulphite reductase 4Fe-4S domain-like Superfamily:Nitrite and sulphite reductase 4Fe-4S domain-like Family:Nitrite and sulphite reductase 4Fe-4S domain-like 88 c1t3bA_ not modelled 6.2 29 PDB header:isomerase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbc; PDBTitle: x-ray structure of dsbc from haemophilus influenzae 89 d1adta2 not modelled 6.1 23 Fold:Zn-binding domains of ADDBP Superfamily:Zn-binding domains of ADDBP Family:Zn-binding domains of ADDBP 90 c2f1eA_ not modelled 6.1 26 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein apag; PDBTitle: solution structure of apag protein 91 d1ekqa_ not modelled 6.1 13 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Thiamin biosynthesis kinases 92 d2o4da1 not modelled 6.0 15 Fold:AhpD-like Superfamily:AhpD-like Family:Atu0492-like 93 d1r4wa_ not modelled 6.0 21 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbA-like 94 d2drpa2 not modelled 5.9 60 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 95 c2k5cA_ not modelled 5.8 17 PDB header:metal binding protein Chain: A: PDB Molecule:uncharacterized protein pf0385; PDBTitle: nmr structure for pf0385 96 d2fug21 not modelled 5.8 12 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:NQO2-like 97 d1twia2 not modelled 5.7 14 Fold:TIM beta/alpha-barrel Superfamily:PLP-binding barrel Family:Alanine racemase-like, N-terminal domain 98 c3f4tA_ not modelled 5.7 17 PDB header:oxidoreductase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of wolbachia pipientis alpha-dsba1 c97a/c146a 99 d1tdha3 not modelled 5.6 29 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0