Job Description P23482 Confidence 100.00% Date Thu Jan 5 11:39:28 GMT 2012 Rank 3 Aligned Residues 467 % Identity 19% Template c3rkoN_ PDB info PDB header:oxidoreductase Chain: N: PDB Molecule:nadh-quinone oxidoreductase subunit n; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution Resolution 3.00 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	D	A	L	Q	L	L	T	W	S	L	I	L	Y	L	F	A	S	L	A	S	L	F	L	L	G	L	D	R	L	A	I	K	L	S	G	I	T	S	L	V	G	G	V	I	G	I	I	S	G	I	T	Q	L	H	A	G	V	T	L	V	A	R	F	A	P	P	F	E	F	A	D	L	T	L	R	M	D	S	L
Query Conservation
Alig confidence																																																																		.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																		.	.	.	.	.	.	.	.	.	.
Template Sequence		I	T	P	Q	N	L	I	A	L	L	P	L	L	I	V	G	L	T	V	V	V	V	M	L	S	I	A	W	R	R	N	H	F	L	N	A	T	L	S	V	I	G	L	N	A	A	L	V	S	L	W	F	V	G	Q	A	G	A	M	D	V	T	P	L	.	.	.	.	.	.	.	.	.	.	M	R	V	D	G	F
Template Known Secondary structure									T	T																				T																											S						S	T	T	.	.	.	.	.	.	.	.	.	.	B			S
Template Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.											.	.	.	70	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.		.	.
Predicted Secondary structure																																																																															.
Query SS confidence																																																																															.
Query Sequence		S	A	F	M	V	L	V	I	S	L	L	V	V	V	C	S	L	Y	S	L	T	Y	M	R	E	Y	E	G	K	G	A	A	A	M	G	F	F	M	N	I	F	I	A	S	M	V	A	L	L	V	M	D	N	A	F	W	F	I	V	L	F	E	M	M	S	L	S	S	W	F	L	V	I	A	R	Q	D	.	K	T
Query Conservation																																																																															.
Alig confidence																																.																																															.
Template Conservation																																.
Template Sequence		A	M	L	Y	T	G	L	V	L	L	A	S	L	A	T	C	T	F	A	Y	P	W	L	E	G	Y	N	D	N	K	.	D	E	F	Y	L	L	V	L	I	A	A	L	G	G	I	L	L	A	N	A	N	H	L	A	S	L	F	L	G	I	E	L	I	S	L	P	L	F	G	L	V	G	Y	A	F	R	Q	K	R
Template Known Secondary structure																												S	S			.																			T	B		S	S										T	T									T	T	T	T	S
Template Predicted Secondary structure																																.
Template SS confidence
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.		.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	I	N	A	G	M	L	Y	F	F	I	A	H	A	G	S	V	L	I	M	I	A	F	L	L	M	G	R	E	S	G	S	L	D	F	A	S	F	R	T	L	S	L	S	P	G	L	A	S	A	V	F	L	L	A	F	F	G	F	G	A	K	A	G	M	M	P	L	H	S	W	L	P	R	A	H	P	A	A	P
Query Conservation
Alig confidence																																								.	.	.
Template Conservation																																								.	.	.
Template Sequence		S	L	E	A	S	I	K	Y	T	I	L	S	A	A	A	S	S	F	L	L	F	G	M	A	L	V	Y	A	Q	S	G	D	L	S	F	V	A	L	.	.	.	G	K	N	E	P	L	L	L	A	G	F	G	L	M	I	V	G	L	G	F	K	L	S	L	V	P	F	H	L	W	T	P	D	V	Y	Q	G	A	P
Template Known Secondary structure																															S	S			S	S	S		S	.	.	.																							T		T	T	S		T									S
Template Predicted Secondary structure																																								.	.	.
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.				190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	H	A	S	A	L	M	S	G	V	M	V	K	I	G	I	F	G	I	L	K	V	A	M	D	L	L	A	Q	T	G	L	P	L	W	W	G	I	L	V	M	A	I	G	A	I	S	A	L	L	G	V	L	Y	A	L	A	E	Q	D	I	K	R	L	L	A	W	S	T	V	E	N	V	G	I	I	L	L	A	V
Query Conservation
Alig confidence																														.	.
Template Conservation																														.	.
Template Sequence		A	P	V	S	T	F	L	A	T	A	S	K	I	A	I	F	G	V	V	M	R	L	F	L	Y	A	P	V	.	.	G	D	S	E	A	I	R	V	V	L	A	I	I	A	F	A	S	I	I	F	G	N	L	M	A	L	S	Q	T	N	I	K	R	L	L	G	Y	S	S	I	S	H	L	G	Y	L	L	V	A	L
Template Known Secondary structure										T																		G	G	.	.	G	G		S																							T			B
Template Predicted Secondary structure																														.	.
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.			.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.				370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure																																																				.	.	.
Query SS confidence																																																				.	.	.
Query Sequence		G	V	A	M	V	G	L	S	L	H	D	P	L	L	T	V	V	G	L	L	G	A	L	F	H	L	L	N	H	A	L	F	K	G	L	L	F	L	G	A	G	A	I	I	S	R	L	H	T	H	.	.	.	D	M	E	K	M	G	A	L	A	K	R	M	P	W	T	A	A	A	C	L	I	G	C	L	A	I	S
Query Conservation																																																				.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.																																		.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.
Template Sequence		I	A	L	Q	T	G	E	M	.	.	.	.	.	.	.	.	.	S	M	E	A	V	G	V	Y	L	A	G	Y	L	F	S	S	L	G	A	F	G	V	V	S	L	M	S	S	P	Y	R	G	P	D	A	D	S	L	F	S	Y	R	G	L	F	W	H	R	P	I	L	A	A	V	M	T	V	M	M	L	S	L	A
Template Known Secondary structure			T	S	S	S		S		.	.	.	.	.	.	.	.	.																													S			S	S				B	G	G	G		S	S		T	T	T	S														T	T
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.
Template SS confidence
		314	.	.	.	.	.	320	.										.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	P	P	L	N	G	F	I	S	E	W	Y	T	W	Q	S	L	F	S	L	S	R	V	E	A	V	A	L	Q	L	A	G	P	I	A	M	V	M	L	A	V	T	G	G	L	A	V	M	C	F	V	K	M	Y	G	I	T	F	C	G	A	P	R	S	T	H	A	E	E	A	Q	E	V	P	N	T	M	I	V
Query Conservation
Alig confidence																									.	.	.	.	.	.	.	.	.	.																																.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.																																.	.	.	.
Template Sequence		G	I	P	M	T	L	G	F	I	G	K	F	Y	V	L	A	V	G	V	Q	A	H	L	.	.	.	.	.	.	.	.	.	.	W	W	L	V	G	A	V	V	V	G	S	A	I	G	L	Y	Y	Y	L	R	V	A	V	S	L	Y	L	H	A	P	E	.	.	.	.	Q	P	S	N	W	Q	Y	S	A	G	G	I
Template Known Secondary structure		T		T	T	S																T	T		.	.	.	.	.	.	.	.	.	.																											S					.	.	.	.				S	T	T
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.																																.	.	.	.
Template SS confidence
		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.											.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.					.	440	.	.	.	.	.	.	.	.	.	450
		477	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	M	L	L	L	A	A	L	C	V	L	I	A	L	S	A	S	W	L	A	P	K	I	M	H	I	A	H	A	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	V	L	I	S	A	L	L	V	L	V	L	G	V	W	P	Q	P	L	I	S	I	V	R	L	A	M	P	L	M
Template Known Secondary structure																										T
Template Predicted Secondary structure
Template SS confidence
		456	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.