Job Description P23482 Confidence 100.00% Date Thu Jan 5 11:39:28 GMT 2012 Rank 1 Aligned Residues 596 % Identity 23% Template c3rkoL_ PDB info PDB header:oxidoreductase Chain: L: PDB Molecule:nadh-quinone oxidoreductase subunit l; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution Resolution 3.00 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.			.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70						.	.	.	.	.	.
Predicted Secondary structure																										.	.																																												.	.	.	.	.
Query SS confidence																										.	.																																												.	.	.	.	.
Query Sequence		L	Q	L	L	T	W	S	L	I	L	Y	L	F	A	S	L	A	S	L	F	L	L	G	L	.	.	D	R	L	A	I	K	L	S	G	I	T	S	L	V	G	G	V	I	G	I	I	S	G	I	T	Q	L	H	A	G	V	T	L	V	A	R	F	A	P	P	F	E	F	.	.	.	.	.	A	D	L	T	L	R
Query Conservation																										.	.																																												.	.	.	.	.
Alig confidence																										.	.																																												.	.	.	.	.
Template Conservation
Template Sequence		M	N	M	L	A	L	T	I	I	L	P	L	I	G	F	V	L	L	A	F	S	R	G	R	W	S	E	N	V	S	A	I	V	G	V	G	S	V	G	L	A	A	L	V	T	A	F	I	G	V	D	F	F	A	N	G	E	Q	T	Y	S	Q	P	L	W	T	W	M	S	V	G	D	F	N	I	G	F	N	L	V
Template Known Secondary structure					T	T																		S		S																														T	T	S														S	S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.		.
Predicted Secondary structure																																																																																.
Query SS confidence																																																																																.
Query Sequence		M	D	S	L	S	A	F	M	V	L	V	I	S	L	L	V	V	V	C	S	L	Y	S	L	T	Y	M	R	E	Y	E	G	K	G	A	A	A	M	G	F	F	M	N	I	F	I	A	S	M	V	A	L	L	V	M	D	N	A	F	W	F	I	V	L	F	E	M	M	S	L	S	S	W	F	L	V	I	A	.	R
Query Conservation																																																																																.
Alig confidence																															.	.																																																.
Template Conservation																															.	.
Template Sequence		L	D	G	L	S	L	T	M	L	S	V	V	T	G	V	G	F	L	I	H	M	Y	A	S	W	Y	M	R	G	.	.	E	E	G	Y	S	R	F	F	A	Y	T	N	L	F	I	A	S	M	V	V	L	V	L	A	D	N	L	L	L	M	Y	L	G	W	E	G	V	G	L	C	S	Y	L	L	I	G	F	Y	Y
Template Known Secondary structure																												T	S	S	.	.		S																					T	B	S	B	S																			T	T	S	T
Template Predicted Secondary structure																															.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.			110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.						.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure																																												.	.	.	.	.
Query SS confidence																																												.	.	.	.	.
Query Sequence		Q	D	K	T	S	I	N	A	G	M	L	Y	F	F	I	A	H	A	G	S	V	L	I	M	I	A	F	L	L	M	G	R	E	S	G	S	L	D	F	A	S	F	.	.	.	.	.	R	T	L	S	L	S	P	G	L	A	S	A	V	F	L	L	A	F	F	G	F	G	A	K	A	G	M	M	P	L	H	S	W
Query Conservation																																												.	.	.	.	.
Alig confidence																																												.	.	.	.	.
Template Conservation
Template Sequence		T	D	P	K	N	G	A	A	A	M	K	A	F	V	V	T	R	V	G	D	V	F	L	A	F	A	L	F	I	L	Y	N	E	L	G	T	L	N	F	R	E	M	V	E	L	A	P	A	H	F	A	D	G	N	N	M	L	M	W	A	T	L	M	L	L	G	G	A	V	G	K	S	A	Q	L	P	L	Q	T	W
Template Known Secondary structure		T	S																																T	S			B													T	T		S	S	S																	T		T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	R	A	H	P	A	A	P	S	H	A	S	A	L	M	S	G	V	M	V	K	I	G	I	F	G	I	L	K	V	A	M	D	L	L	A	Q	T	G	L	P	L	W	W	G	I	L	V	M	A	I	G	A	I	S	A	L	L	G	V	L	Y	A	L	A	E	Q	D	I	K	R	L	L	A	W	S	T	V	E
Query Conservation
Alig confidence																																					.	.	.	.
Template Conservation																																					.	.	.	.
Template Sequence		L	A	D	A	M	A	G	P	T	P	V	S	A	L	I	H	A	A	T	M	V	T	A	G	V	Y	L	I	A	R	T	H	G	L	F	.	.	.	.	L	M	T	P	E	V	L	H	L	V	G	I	V	G	A	V	T	L	L	L	A	G	F	A	A	L	V	Q	T	D	I	K	R	V	L	A	Y	S	T	M	S
Template Known Secondary structure						T	T	S											T	T												T					.	.	.	.		T	S																							T	T		S	B
Template Predicted Secondary structure																																					.	.	.	.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.					.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.		.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																									.
Query SS confidence																																																									.
Query Sequence		N	V	G	I	I	L	L	A	V	G	V	A	M	V	G	L	S	L	H	D	P	L	L	T	V	V	G	L	L	G	A	L	F	H	L	L	N	H	A	L	F	K	G	L	L	F	L	G	A	G	A	I	I	S	R	.	L	H	T	H	D	M	E	K	M	G	A	L	A	K	R	M	P	W	T	A	A	A	C	L
Query Conservation																																																									.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	I	G	Y	M	F	L	A	L	G	V	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	W	D	A	A	I	F	H	L	M	T	H	A	F	F	K	A	L	L	F	L	A	S	G	S	V	I	L	A	C	H	H	E	Q	N	I	F	K	M	G	G	L	R	K	S	I	P	L	V	Y	L	C	F	L
Template Known Secondary structure												T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														T	T	S			B	S	T	T					T	T	T
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		315	.	.	.	.	320	.	.	.	.	.	.															.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
		390	.	.	.	.	.	.	.	.	.	400	.	.		.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.
Predicted Secondary structure															.
Query SS confidence															.
Query Sequence		I	G	C	L	A	I	S	A	I	P	P	L	N	.	G	F	I	S	E	W	Y	T	W	Q	S	L	F	S	L	S	R	V	E	A	V	A	L	Q	L	A	G	P	I	A	M	V	M	L	A	V	T	G	G	L	A	V	M	C	F	V	K	M	Y	G	I	T	F	C	G	A	P	R	S	T	H	A	E	E	A	Q
Query Conservation															.
Alig confidence															.																		.	.	.	.	.	.	.	.	.	.																																	.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.																																	.	.	.
Template Sequence		V	G	G	A	A	L	S	A	L	P	L	V	T	A	G	F	F	S	K	D	E	I	L	A	G	A	M	A	N	G	H	.	.	.	.	.	.	.	.	.	.	I	N	L	M	V	A	G	L	V	G	A	F	M	T	S	L	Y	T	F	R	M	I	F	I	V	F	H	G	K	E	Q	I	.	.	.	H	A	H	A
Template Known Secondary structure									T		S	S	S	B															T	T	T		.	.	.	.	.	.	.	.	.	.																											S	S				S	.	.	.
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.																																	.	.	.
Template SS confidence
		381	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.											.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.				.	.	.	.
		469	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	V	P	N	T	M	I	V	A	M	L	L	L	A	A	L	C	V	L	I	A	L	S	A	S	W	L	A	P	K	I	M	H	I	A	H	A	F	T	N	T	P	P	A	T	V	A	S	G	I	A	L	V	P	G	T	F	H	T	Q	V	T	P	S	L	L	L	L	L	L	L	A	M	P	L	L	P	G	L	Y
Query Conservation
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	K	G	V	T	H	S	L	P	L	I	V	L	L	I	L	S	T	F	V	G	A	L	I	V	P	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	Q	G	V	L	P	Q	T	T	E	L	A	H	G	S	M	L	T	L	E	I	T	S	G	V	V	A	V	V	G	I	L	L	A
Template Known Secondary structure																			B	T	T	G	G	G					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T	T										S
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		448	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.																				.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.
		549	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	L	W	C	R	S	R	R	A	A	F	R	R	T	G	D	A	W	A	C	G	Y	G	W	E	N	A	M	A	P	S	G	N	G	V	M	Q	P	L	R	V	V	F	S	A	L	F	R	L	R	Q	Q	L	D	P	T	L	R	L	N	K	G	L	A	H	V	T	A	R	A	Q	S	T	E	P	F	W	D	E	R
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.
Template Sequence		A	W	L	W	L	G	K	R	T	L	V	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	A	N	S	A	P	G	R	L	L	S	T	W	W	Y	N	A	W	G	F	D	W	L	Y	D	K	V	F	V	K	P	F	L	G	I	A	W	.	.	.	.	.	L	L	K	R	D	P	L	N	S
Template Known Secondary structure						S	S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				S												T	G	G	G									T										.	.	.	.	.		T	S	S
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.
Template SS confidence
		509	510	.	.	.	.	.	.	.	.	.	520	.																	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.						.	560	.	.	.	.	.	.	.
		629	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	R	P	I	V	S	A	T	Q	R	L	A	K	E	I	Q	H	L	Q	S	G	D	F	R	L	Y	C	L	Y	V	V	A	A	L	V	V	L	L	I	A	I	A	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	M	N	I	P	A	V	L	S	R	F	A	G	K	G	L	L	L	S	E	N	G	Y	L	R	W	Y	V	A	S	M	S	I	G	A	V	V	V	L	A	L	L	M	V
Template Known Secondary structure																			T	T
Template Predicted Secondary structure
Template SS confidence
		568	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.