Return to main results Retrieve Phyre Job Id

Job DescriptionP08722
Confidence97.08%DateThu Jan 5 11:01:37 GMT 2012
Rank12Aligned Residues104
% Identity13%Templated1qwya_
SCOP infoBarrel-sandwich hybrid Duplicated hybrid motif Peptidoglycan hydrolase LytM
Resolution1.30

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   461........470.........480.........490.........500.........510.... .....520.........530.. .
Predicted Secondary structure 


































.








......
Query SS confidence 





















































.

















. . . . . .
Query Sequence  GAPQEKTPEVITPPEQGGICSPMTGEIVPLIHVADTTFASGLLGKGIAILPSVG. EVRSPVAGRIASLFATLH. . . . . . A
Query Conservation                
   
  
  
    
  
 
  
     
 
 

 
   . 
 

  
 
     
 
......
Alig confidence 




























....




















.

















......
Template Conservation                         
     ....          
 



    



 
   
 
         

 
  
Template Sequence  QSNVGPDASYYSSGHAKDASWLTSRKQLQ. . . . PYGQYHGGGAHYGVDYAMPENSPVYSLTDGTVVQAGWSNYGGGNQVT
Template Known Secondary structure 
SS



GGGT




SS
TS
....
S
TTSS
S

TT

SSSTTTT
Template Predicted Secondary structure 




























....



























Template SS confidence 















































































   135....140.........150.........160... ......170.........180.........190.........200.........210
 
   534.....540.........550.........560.........570.........
Predicted Secondary structure 





















Query SS confidence 













































Query Sequence  IGIESDDGVEILIHVGIDTVKLDGKFFSAHVNVGDKVNTGDRLISF
Query Conservation    
    
 










 
 
  
   
  
  
  
  
   
Alig confidence 















...........


















Template Conservation 
 
      
 
 
  ...........   
  
  
  
  

  
Template Sequence  IKEANSNNYQWYMHNN. . . . . . . . . . . RLTVSAGDKVKAGDQIAYS
Template Known Secondary structure  TTSSS...........


TT

TT

Template Predicted Secondary structure 




...........










Template SS confidence 













































   247..250.........260.. .......270.........280.
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions