Job Description P08722 Confidence 100.00% Date Thu Jan 5 11:01:37 GMT 2012 Rank 5 Aligned Residues 372 % Identity 15% Template c3qnqD_ PDB info PDB header:membrane protein, transport protein Chain: D: PDB Molecule:pts system, cellobiose-specific iic component; PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system Resolution 3.29 Å

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		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.					.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.					160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.																											.	.	.	.
Query SS confidence																																						.	.	.	.																											.	.	.	.
Query Sequence		N	R	F	V	Y	V	I	S	G	I	F	T	P	L	I	G	L	M	A	A	T	G	I	L	K	G	M	L	A	L	A	L	T	F	Q	W	.	.	.	.	T	T	E	Q	S	G	T	Y	L	I	L	F	S	A	S	D	A	L	F	W	F	F	P	I	I	L	.	.	.	.	G	Y	T	A	G	K	R	F	G	G
Query Conservation																																						.	.	.	.																											.	.	.	.
Alig confidence																																						.	.	.	.																											.	.	.	.
Template Conservation
Template Sequence		Q	R	H	L	L	A	I	R	D	G	L	V	L	T	M	P	F	L	I	I	G	S	I	F	L	I	I	S	T	L	P	I	P	G	Y	S	E	F	M	A	S	L	F	G	K	N	W	N	V	A	L	G	Y	P	V	S	A	T	F	N	I	M	A	L	I	A	V	F	G	I	A	Y	R	L	G	E	Y	Y	K	V
Template Known Secondary structure													G	G	G	T	T													T				T	T	T	T	T						T		S			T	T	G	G	G								T	T																		T	S
Template Predicted Secondary structure
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.										.	.	240
Predicted Secondary structure																																																																						.	.	.	.	.	.	.	.	.
Query SS confidence																																																																						.	.	.	.	.	.	.	.	.
Query Sequence		N	P	F	T	A	M	V	I	G	G	A	L	V	H	P	L	I	L	T	A	F	E	N	G	Q	K	A	D	A	L	G	L	D	F	L	G	I	P	V	T	L	L	N	Y	S	S	S	V	I	P	I	I	F	S	A	W	L	C	S	I	L	E	R	R	L	N	A	W	.	.	.	.	.	.	.	.	.	L	P	S
Query Conservation																																																																						.	.	.	.	.	.	.	.	.
Alig confidence																																																																						.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	A	L	A	S	G	A	L	S	L	V	T	F	L	L	A	T	P	F	Q	V	A	Y	I	M	P	G	T	K	E	S	I	L	V	D	G	V	I	P	A	A	L	M	G	S	Q	G	L	F	V	A	M	I	I	A	I	I	S	T	E	I	Y	R	F	L	V	Q	K	K	M	I	I	K	M	P	E	T	V	P	P
Template Known Secondary structure																		S		S							T	T	T	S							S				T	T	T	T	T	T	T	T																					T	T		S					T	T	S
Template Predicted Secondary structure
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.							.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure																																														.	.	.	.	.	.																											.	.	.	.
Query SS confidence																																														.	.	.	.	.	.																											.	.	.	.
Query Sequence		A	I	K	N	F	F	T	P	L	L	C	L	M	V	I	T	P	V	T	F	L	L	V	G	P	L	S	T	W	I	S	E	L	I	A	A	G	Y	L	W	L	Y	Q	A	.	.	.	.	.	.	V	P	A	F	A	G	A	V	M	G	G	F	W	Q	I	F	V	M	F	G	L	H	W	G	L	V	.	.	.	.
Query Conservation																																														.	.	.	.	.	.																											.	.	.	.
Alig confidence																																														.	.	.	.	.	.																											.	.	.	.
Template Conservation
Template Sequence		A	V	T	R	S	F	A	A	L	I	P	G	F	I	V	V	T	V	V	W	I	I	R	L	I	F	E	H	T	T	F	G	S	I	H	N	V	V	G	K	L	L	Q	E	P	L	S	I	L	G	A	S	L	W	G	A	V	I	A	V	I	L	V	H	V	L	W	A	C	G	I	H	G	A	T	I	V	G	G	V
Template Known Secondary structure																													T	S	S	S		S									T	T	T								S																	T	T	S						T
Template Predicted Secondary structure
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
				311	.	.	.	.	.	.	.	.	320	.	.	.																.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
Predicted Secondary structure		.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	P	L	C	I	N	N	F	T	V	L	G	Y	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	M	I	P	L	L	M	P	A	I	M	A	Q	V	G	A	A	L	G	V	F	L	C	E	R	D	A	Q	K	K	V	V	A	G	S	A	A	L	T	S	L	F	G	I	T	E	P	A	V	Y
Query Conservation		.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	S	P	I	W	L	S	L	M	D	Q	N	R	I	A	F	Q	A	G	Q	D	V	P	N	T	I	T	A	Q	F	F	D	L	W	I	Y	M	G	G	S	G	A	T	L	A	L	V	V	G	M	L	L	F	A	R	S	Q	Q	L	K	S	L	G	R	L	S	I	A	P	G	I	F	N	I	N	E	M	V	T	F
Template Known Secondary structure																			T	T						S										T	S		S	S	S	S	S	T													S										T	S					T	T
Template Predicted Secondary structure
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
		374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.					.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.
Query SS confidence																																		.	.	.	.
Query Sequence		G	V	N	L	P	R	K	Y	P	F	V	I	A	C	I	S	G	A	L	G	A	T	I	I	G	Y	A	Q	T	K	V	Y	.	.	.	.	S	F	G	L	P	S	I	F	T	F	M	Q	T	I	P	S	T	G	I	D	F	T	V	W	A	S	V	I	G	G	V	I	A	I	G	C	A	F	V	G	T	V	M	L
Query Conservation																																		.	.	.	.
Alig confidence																																		.	.	.	.
Template Conservation
Template Sequence		G	M	P	I	V	M	N	P	L	L	L	I	P	F	I	V	V	P	V	V	L	T	I	V	S	Y	F	A	M	E	W	G	L	V	A	R	P	S	G	A	A	V	T	W	T	T	P	I	L	F	S	G	Y	L	G	S	G	G	K	I	S	G	V	I	L	Q	L	V	N	F	A	L	A	F	V	I	Y	L	P	F
Template Known Secondary structure			T	T		T	T		T	T	T																					T	T	S	S					S					T	T	S									T	T	T	T		T	T	T
Template Predicted Secondary structure
Template SS confidence
		339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.
		450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	F	I	T	A	K	R	Q	P	A	Q	G	A	P	Q	E	K	T	P	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	K	I	W	D	K	Q	K	I	A	E	E	K	G	E	A	A	A	E	N
Template Known Secondary structure														T	T
Template Predicted Secondary structure
Template SS confidence
		419	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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