 |
Job Description | P05050 | Confidence | 12.77% | Date | Thu Jan 5 10:58:38 GMT 2012 |
Rank | 33 | Aligned Residues | 37 |
% Identity | 19% | Template | c3uyjA_ |
PDB info |
PDB header:oxidoreductase | Chain: A: PDB Molecule:lysine-specific demethylase 8; |
PDBTitle: crystal structure of jmjd5 catalytic core domain in complex with2 nickle and alpha-kg
|
Resolution | 2.35 Å |
|
  |   |
161 | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
R | N | D | P | L | K | R | L | L | L | E | H | G | D | V | V | V | W | G | G | E | S | R | L | F | Y | H | G | I | Q | P | L | K | A | G | F | H | P | L | T | I | D | C | R | Y | N | L | T | F |
Query Conservation |   |
  |   |   |   |   |   |   |
|   |
|   |   |
|
|
|
|
|
|   |
|   |
|
|   |
|   |
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |
|   |
|
|
|   |
|
|
|
| . | . | . |   |
|
|   |
|   |
|   |   |   |   |   | . | . | . | . | . | . | . | . | . |
|
|
|
|   |   |
Template Sequence |   |
A | K | A | P | F | L | S | C | I | L | S | P | G | E | I | L | F | I | P | . |
. |
. |
V | K | Y | W | H | Y | V | R | A | L | D | L | . |
. |
. |
. |
. |
. |
. |
. |
. |
S | F | S | V | S | F |
Template Known Secondary structure |   |
T | T |
|
|
|  |  |  |  |  |
| T | T |
|  |  |  |  |
| . | . | . | T | T |
|  |  |  |  |  |  | S | S | S | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |
| . | . | . |
|
|
|  |  |  |  |  |  |
|
|
| . | . | . | . | . | . | . | . | . |
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
377 | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | |
|
|
. | . | . | . | 400 | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
. | . | 410 | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|