Job Description P05050 Confidence 100.00% Date Thu Jan 5 10:58:38 GMT 2012 Rank 2 Aligned Residues 177 % Identity 24% Template c3thtB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:alkylated dna repair protein alkb homolog 8; PDBTitle: crystal structure and rna binding properties of the rrm/alkb domains2 in human abh8, an enzyme catalyzing trna hypermodification, northeast3 structural genomics consortium target hr5601b Resolution 3.01 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	A	E	P	W	Q	E	P	L	A	A	G	A	V	I	L	R	R	F	A	F	N	A	A	E	Q	L	I	R	D	I	N	D	V	A	S	Q	S	P	F	R	Q	M	V	T	P	G	G	Y	T	M	S	V	A	M	T	N	C	G	H	L	G	W	T	T	H	R	Q	G	Y	L	Y	S	P	I	D	P	Q	T
Query Conservation
Alig confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.
Template Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.
Template Sequence		Q	W	K	E	L	R	P	Q	A	L	P	P	G	L	M	V	V	E	E	I	I	S	S	E	E	E	K	M	L	L	E	S	V	D	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	R	V	K	H	F	G	Y	E	F	N	V	D	K	D	K	P	.	.
Template Known Secondary structure										S		S	T	T					T	T		S											T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							S	B							S	S		.	.
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.
Template SS confidence
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.																											.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	K	P	W	P	A	M	P	Q	S	F	H	N	L	C	Q	R	A	A	T	A	A	G	Y	P	D	F	Q	P	D	A	C	L	I	N	R	Y	A	P	G	A	K	L	S	L	H	Q	D	K	D	E	P	D	L	R	A	P	I	V	S	V	S	L	G	L	P	A	I	F	Q	F	G	G	L	K	R	N	D	P	L
Query Conservation
Alig confidence		.	.																				.																											.																								.	.
Template Conservation		.	.																				.																											.																								.	.
Template Sequence		.	.	L	S	G	G	L	P	D	I	C	E	S	F	L	E	K	W	L	R	K	.	G	Y	I	K	H	K	P	D	Q	M	T	I	N	Q	Y	E	P	G	Q	G	I	P	A	H	I	D	.	T	H	S	A	F	E	D	E	I	V	S	L	S	L	G	S	E	I	V	M	D	F	K	.	.	H	P	D	G	I	A
Template Known Secondary structure		.	.	B		S		S															.	T	S		S	S			S									T	T									.		T	T	T											S	S								.	.		T	T	S
Template Predicted Secondary structure		.	.																				.																											.																								.	.
Template SS confidence
				196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.		.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.			.	.	.	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.		.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200																	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure																					.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	R	L	L	L	E	H	G	D	V	V	V	W	G	G	E	S	R	L	.	F	Y	H	G	I	Q	P	L	K	A	G	F	H	P	L	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	D	C	R	Y	N	L	T	F	R	Q	A	G	K	K	E
Query Conservation																					.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	P	V	M	L	P	R	R	S	L	L	V	M	T	G	E	S	R	Y	L	W	T	H	G	I	T	C	R	K	F	D	T	V	Q	A	L	K	S	G	I	I	T	S	D	V	G	D	L	T	L	S	K	R	G	L	R	T	S	F	T	F	R	K	V	R	Q	T	P
Template Known Secondary structure								T	T												T	S								S									S					S	S	S	S																					S
Template Predicted Secondary structure
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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