Job Description P05050 Confidence 83.88% Date Thu Jan 5 10:58:38 GMT 2012 Rank 19 Aligned Residues 159 % Identity 16% Template c3kt4A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:pkhd-type hydroxylase tpa1; PDBTitle: crystal structure of tpa1 from saccharomyces cerevisiae, a2 component of the messenger ribonucleoprotein complex Resolution 2.73 Å

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		G	A	V	I	L	R	R	F	A	F	N	A	A	E	Q	L	I	R	D	I	N	D	V	A	S	Q	S	P	F	R	Q	M	V	T	P	G	G	Y	T	M	S	V	A	M	T	N	C	G	H	L	G	W	T	T	H	R	Q	G	Y	L	Y	S	P	I	D	P	Q	T	N	K	P	W	P	A	M	P	Q	S	F	.
Query Conservation																																																																																	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	W	G	T	I	H	E	L	V	N	D	D	L	L	R	A	V	R	K	E	I	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	E	I	H	F	T	K	K	E	T	D	I	Y	R	V	N	Q	S	G	S	G	L	D	W	D	D	L	S	R	L	P	N	L	F	K	L	R	Q
Template Known Secondary structure							S	S		B														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											S	S												T	T			T	T
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.																					.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
						97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.			.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.												150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.																				.	.																																			.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.																				.	.																																			.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	H	N	L	C	Q	R	A	A	T	A	A	G	Y	P	D	F	Q	P	D	.	.	A	C	L	I	N	R	Y	A	P	G	A	K	L	S	L	H	Q	D	K	D	E	P	D	L	R	A	P	I	V	S	V	S	L	G	.	.	.	.	.	.	.	.	.	.	.	L	P	A	I	F	Q	F	G	G	L
Query Conservation		.	.	.	.																				.	.																																			.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.																				.	.																			.	.	.														.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																													.	.	.
Template Sequence		I	L	Y	S	K	Q	Y	R	D	F	F	G	Y	V	T	K	A	G	K	L	S	G	S	K	T	D	X	S	I	N	T	Y	T	K	G	C	H	L	L	T	H	D	D	.	.	.	V	I	G	S	R	R	I	S	F	I	L	Y	L	P	D	P	D	R	K	W	K	S	H	Y	G	G	G	L	R	L	F	P	S	I
Template Known Secondary structure					S											T	T						S	S											T	T									.	.	.			T	T										S		T	T	S				G	G	G	B
Template Predicted Secondary structure																																													.	.	.
Template SS confidence
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.				.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
		160	.	.	.	.					.	.	.	.	.	170	.	.	.	.	.	.	.	.				.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.															.	.	.
Query SS confidence							.	.	.	.															.	.	.
Query Sequence		K	R	N	D	P	.	.	.	.	L	K	R	L	L	L	E	H	G	D	V	V	V	W	.	.	.	G	G	E	S	R	L	F	Y	H	G	I	Q	P	L	K	A	G	F	H	P	L	T	I	D	C	R	Y	N	L	T
Query Conservation							.	.	.	.															.	.	.
Alig confidence							.	.	.	.															.	.	.					.	.	.													.	.	.	.	.	.
Template Conservation																																.	.	.													.	.	.	.	.	.
Template Sequence		L	P	N	V	P	H	S	D	P	S	A	K	L	V	P	Q	F	N	Q	I	A	F	F	K	V	L	P	G	F	S	.	.	.	F	H	D	V	E	E	V	K	V	D	K	H	.	.	.	.	.	.	R	L	S	I	Q
Template Known Secondary structure			T	T				S	S		S							T	T									T	T	T		.	.	.							B		S	S			.	.	.	.	.	.
Template Predicted Secondary structure																																.	.	.													.	.	.	.	.	.
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.				.	.	.	.	230	.	.	.	.	.	.	.							.	.	240	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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