Job Description P05050 Confidence 3.05% Date Thu Jan 5 10:58:38 GMT 2012 Rank 85 Aligned Residues 52 % Identity 21% Template c3iyuY_ PDB info PDB header:virus Chain: Y: PDB Molecule:outer capsid protein vp4; PDBTitle: atomic model of an infectious rotavirus particle Resolution 3.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.		.	.	.	.	.
Predicted Secondary structure																																																					.
Query SS confidence																																																					.
Query Sequence		K	D	E	P	D	L	R	A	P	I	V	S	V	S	L	G	L	P	A	I	F	Q	F	G	G	L	K	R	N	D	P	L	K	R	L	L	L	E	H	G	D	V	V	V	W	G	G	E	S	R	L	.	F	Y	H	G	I
Query Conservation																																																					.
Alig confidence																			.	.	.	.																															.
Template Conservation																			.	.	.	.
Template Sequence		D	D	S	Q	A	F	R	N	M	V	Y	V	R	S	L	A	A	.	.	.	.	N	L	N	S	V	I	C	T	G	G	D	Y	S	F	A	L	P	V	G	Q	W	P	V	M	T	G	G	A	V	S	L	H	S	A	G	V
Template Known Secondary structure				T					T			S							.	.	.	.																	S	S	S
Template Predicted Secondary structure																			.	.	.	.
Template SS confidence
		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.					.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions