Job Description P05050 Confidence 92.18% Date Thu Jan 5 10:58:38 GMT 2012 Rank 14 Aligned Residues 184 % Identity 15% Template c2opwA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:phyhd1 protein; PDBTitle: crystal structure of human phytanoyl-coa dioxygenase phyhd1 (apo) Resolution 1.90 Å

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure																																																																														.	.	.	.
Query SS confidence																																																																														.	.	.	.
Query Sequence		G	A	V	I	L	R	R	F	A	F	N	A	A	E	Q	L	I	R	D	I	N	D	V	A	S	Q	S	P	F	R	Q	M	V	T	P	G	G	Y	T	M	S	V	A	M	T	N	C	G	H	L	G	W	T	T	H	R	Q	G	Y	L	Y	S	P	I	D	P	Q	T	N	K	P	W	P	A	M	P	.	.	.	.
Query Conservation																																																																														.	.	.	.
Alig confidence																																																																														.	.	.	.
Template Conservation
Template Sequence		G	F	L	V	L	E	G	F	L	S	A	E	E	C	V	A	M	Q	Q	R	I	G	E	I	V	A	E	M	D	V	P	L	H	C	R	T	E	F	S	T	Q	E	E	E	Q	L	R	A	Q	G	S	T	D	Y	F	L	S	S	G	D	K	I	R	F	F	F	E	K	G	V	F	D	E	K	G	N	F	L	V	P
Template Known Secondary structure		S					T	T	S	S																		T					G	G	G	S	S				S																	T	T	T	T	S							T	T	S	B		T	T	S		B	S	S
Template Predicted Secondary structure
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
																		94	.	.	.	.	.						100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.			.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.				.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.																											.	.																		.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.																											.	.																		.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	S	F	H	N	L	.	.	.	.	.	C	Q	R	A	A	T	A	A	G	Y	P	D	F	Q	P	D	A	C	L	I	N	R	Y	A	P	G	.	.	A	K	L	S	L	H	Q	D	K	D	E	P	D	L	R	A	P	.	.	.	I	V	S	V	S
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.																											.	.																		.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.																											.	.																		.	.	.
Template Conservation
Template Sequence		P	E	K	S	I	N	K	I	G	H	A	L	H	A	H	D	P	V	F	K	S	I	T	H	S	F	K	V	Q	T	L	A	R	S	L	G	L	Q	M	P	V	V	V	Q	S	M	Y	I	F	K	Q	P	H	F	G	G	E	V	S	P	H	Q	D	A	S	F	L	Y	T	E	P	L	G	R	V	L	G	V	W	I
Template Known Secondary structure		G	G	G	S																				T												T		S	S													T	T	T	B								G	G	G	T	S				S	S	S
Template Predicted Secondary structure
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		148	.	150	.	.						.	.	.	.	.	.	.	160	.	.	.	.	.																										.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	G	L	P	A	.	.	.	.	.	I	F	Q	F	G	G	L	K	R	N	D	P	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	R	L	L	L	E	H	G	D	V	V	V	W	G	G	E	S	R	L	F	Y	H	G	I	Q	P	L	K	A	G	F	H
Query Conservation							.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.
Template Conservation																																																																			.	.	.
Template Sequence		A	V	E	D	A	T	L	E	N	G	C	L	W	F	I	P	G	S	H	T	S	G	V	S	R	R	M	V	R	A	P	P	G	T	S	F	L	G	S	E	P	A	R	D	N	S	L	F	V	P	T	P	V	Q	R	G	A	L	V	L	I	H	G	E	V	.	.	.	V	H	K	S	K	Q	N	L	S	D	R	S
Template Known Secondary structure			S	S		B		T	T	T	T						T	T		S	S	S			S																					G	G	G						B		T	T							T	T		.	.	.							B		S	S	S
Template Predicted Secondary structure																																																																			.	.	.
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240				.	.	.	.	.	.	.	.	.	250	.	.
		198	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	T	I	D	C	R	Y	N	L	T	F	R
Query Conservation
Alig confidence		.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	R	Q	A	Y	T	F	H
Template Known Secondary structure		.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.
Template SS confidence
								257	.	.	260	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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