Phyre 2 alignment of P66899 with d1ve1a1

Job Description P66899
Confidence 100.00% Date Thu Jan 5 12:10:21 GMT 2012

Rank 24 Aligned Residues 288

% Identity 22% Template d1ve1a1

SCOP info Tryptophan synthase beta subunit-like PLP-dependent enzymes Tryptophan synthase beta subunit-like PLP-dependent enzymes Tryptophan synthase beta subunit-like PLP-dependent enzymes

Resolution 1.45

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Q	K	I	A	G	Y	R	P	T	P	L	C	A	L	D	D	L	A	N	L	F	G	V	K	K	I	L	V	K	D	E	S	K	R	F	G	L	N	A	F	K	M	L	G	G	A	Y	A	I	A	Q	L	L	C	E	K	Y	H	L	D	I	E	T	L	S	F	E	H	L	K	N	A	I	G	E	K	M	T	F	A
Query Conservation
Alig confidence																								.											.																							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.											.																							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	R	V	E	G	A	I	G	K	T	P	V	V	R	L	A	K	V	V	E	P	D	M	A	.	E	V	W	V	K	L	E	G	L	N	.	P	G	G	S	I	K	D	R	P	A	W	Y	M	I	K	D	A	E	E	R	G	I	.	.	.	.	.	.	.	.	.	.	.	.	.	L	R	P	G	S	G	Q	V	I	V
Template Known Secondary structure		G	G	G	G											S	S	S		T	T	S		.							G	G	G	S	.	T	T	S	B	T	T														T	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T	S
Template Predicted Secondary structure																								.											.																							.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.		.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.														.	.	.	60	.	.	.	.	.	.

	117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.			.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure																																																				.	.
Query SS confidence																																																				.	.
Query Sequence	T	T	T	D	G	N	H	G	R	G	V	A	W	A	A	Q	Q	L	G	Q	N	A	V	I	Y	M	P	K	G	S	A	Q	E	R	V	D	A	I	L	N	L	G	A	E	C	I	V	T	D	M	N	.	.	Y	D	D	T	V	R	L	T	M	Q	H	A	Q	Q	H	G	W	E	V	V	Q	D	T	A	W	E	G
Query Conservation																																																				.	.
Alig confidence																																																				.	.																								.	.	.	.
Template Conservation																																																																													.	.	.	.
Template Sequence	E	P	T	S	G	N	T	G	I	G	L	A	M	I	A	A	S	R	G	Y	R	L	I	L	T	M	P	A	Q	M	S	E	E	R	K	R	V	L	K	A	F	G	A	E	L	V	L	T	D	P	E	R	R	M	L	A	A	R	E	E	A	L	R	L	K	E	E	L	G	A	F	M	P	D	Q	F	.	.	.	.
Template Known Secondary structure		S			S														T									T	T												T	T								T	T	T																	T		B				T	T	.	.	.	.
Template Predicted Secondary structure																																																																													.	.	.	.
Template SS confidence
	67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.

	195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Y	T	K	I	P	T	W	I	M	Q	G	Y	A	T	L	A	D	E	A	V	E	Q	M	R	E	M	G	V	T	P	T	H	V	L	L	Q	A	G	V	G	A	M	A	G	G	V	L	G	Y	L	V	D	V	Y	S	P	Q	N	L	H	S	I	I	V	E	P	D	K	A	D	C	I	Y	R	S	G	V	K	G	D
Query Conservation
Alig confidence	.	.																						.	.	.																													.	.
Template Conservation	.	.																						.	.	.																													.	.
Template Sequence	.	.	K	N	P	A	N	V	R	A	H	Y	E	T	T	G	P	E	L	Y	E	A	L	.	.	.	E	G	R	I	D	A	F	V	Y	G	S	G	T	G	G	T	I	T	G	V	G	R	Y	L	K	E	R	I	.	.	P	H	V	K	V	I	A	V	E	P	A	R	S	N	V	L	S	G	G	K	M	G	Q	H
Template Known Secondary structure	.	.	T											T									T	.	.	.	T	T			S							S	S	S												T	T		.	.	T	T									G	G	G		T	T	T	T
Template Predicted Secondary structure	.	.																						.	.	.																													.	.
Template SS confidence
			143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.				.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.			.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.

	275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	I	V	N	V	G	G	D	M	A	T	I	M	A	G	L	A	C	G	E	P	N	P	L	G	W	E	I	L	R	N	C	A	T	Q	F	I	S	C	Q	D	S	V	A	A	L	G	M	R	V	L	G	N	P	Y	G	N	D	P	R	I	I	S	G	E	S	G	A	V	G	L	G	V	L	A	A	V	H	Y	H	P
Query Conservation
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.																					.
Template Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.																					.
Template Sequence	G	F	Q	G	M	.	.	.	.	.	.	.	.	.	.	.	.	.	G	P	G	F	I	P	E	N	L	D	L	S	L	L	D	G	V	I	Q	V	W	E	E	D	A	F	P	L	A	R	R	L	A	R	E	E	G	.	.	.	.	L	F	L	G	M	S	S	G	G	I	V	W	A	A	L	Q	V	A	R	E	.
Template Known Secondary structure	S		T	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.			S	S			T	T			G	G	G		S																							.	.	.	.			B																		.
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.																					.
Template SS confidence
	216	.	.	.	220														.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.					.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.

	355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Q	R	Q	S	L	M	E	K	L	A	L	N	K	D	A	V	V	L	V	I	S	T	E	G
Query Conservation
Alig confidence	.	.	.	.	.	.	.	.	.	.
Template Conservation	.	.	.	.	.	.	.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	.	.	L	G	P	G	K	R	V	A	C	I	S	P	D	G
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.			T	T									B	B
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.
Template SS confidence
											278	.	280	.	.	.	.	.	.	.	.	.	290	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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