Job Description P66899 Confidence 100.00% Date Thu Jan 5 12:10:21 GMT 2012 Rank 2 Aligned Residues 359 % Identity 18% Template c3r0zA_ PDB info PDB header:lyase Chain: A: PDB Molecule:d-serine dehydratase; PDBTitle: crystal structure of apo d-serine deaminase from salmonella2 typhimurium Resolution 2.40 Å

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		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.											.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.								60	.	.	.	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.	80
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.														.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.														.
Query Sequence		E	T	S	P	L	F	S	Q	S	Q	A	K	L	A	R	Q	F	H	Q	K	.	.	.	.	.	.	.	.	.	.	I	A	G	Y	R	P	T	P	L	C	A	L	D	D	L	A	N	L	F	G	V	.	.	.	.	.	.	.	K	K	I	L	V	K	D	E	S	K	R	F	G	.	L	N	A	F	K	M	L	G
Query Conservation																						.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.														.
Alig confidence																						.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.												.		.
Template Conservation																																																																							.
Template Sequence		P	Y	V	G	L	T	E	Q	D	V	N	A	A	H	D	R	L	A	R	F	A	P	Y	L	A	K	A	F	P	Q	T	G	G	M	I	E	S	D	V	V	A	I	P	A	M	Q	K	R	L	E	K	E	Y	G	Q	T	I	N	G	E	M	L	L	K	K	D	S	H	L	.	A	I	S	G	S	I	K	A	R	G
Template Known Secondary structure		G	G	T																									S	T	T																													S							G	G	G		.	T	T	T	S	B	T
Template Predicted Secondary structure																																																																							.
Template SS confidence
		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.		.	.	.	110	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.								.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.
Query Sequence		G	A	Y	A	I	A	Q	L	L	C	E	K	Y	H	L	.	.	.	.	.	.	.	D	I	E	T	L	S	F	E	H	L	K	N	A	I	G	E	K	M	T	F	A	T	T	T	D	G	N	H	G	R	G	V	A	W	A	A	Q	Q	L	G	Q	N	A	V	I	Y	M	P	K	G	S	A	Q	E	R	V	D	A
Query Conservation																	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	I	Y	E	V	L	T	H	A	E	K	L	A	L	E	A	G	L	L	T	T	D	D	D	Y	S	V	L	L	S	P	E	F	K	Q	F	F	S	Q	Y	S	I	A	V	G	S	T	G	N	L	G	L	S	I	G	I	M	S	A	C	I	G	F	K	V	T	V	H	M	S	A	D	A	R	A	W	K	K	A	K
Template Known Secondary structure																		T	S			T	T	S		G	G	G	G	G	S								T	T	S							S	S														T									T	T	S
Template Predicted Secondary structure
Template SS confidence
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220						.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																					.	.	.	.	.
Query SS confidence																																																																					.	.	.	.	.
Query Sequence		I	L	N	L	G	A	E	C	I	V	T	D	M	N	Y	D	D	T	V	R	L	T	M	Q	H	A	Q	Q	H	G	W	E	V	V	Q	D	T	A	W	E	G	Y	T	K	I	P	T	W	I	M	Q	G	Y	A	T	L	A	D	E	A	V	E	Q	M	R	E	M	.	.	.	.	.	G	V	T	P	T	H	V	L
Query Conservation																																																																					.	.	.	.	.
Alig confidence																																						.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.
Template Conservation																																						.	.	.	.	.	.	.	.	.	.
Template Sequence		L	R	S	H	G	V	T	V	V	E	Y	E	D	D	Y	G	V	A	V	E	Q	G	R	K	A	A	Q	S	D	P	N	C	F	F	I	S	.	.	.	.	.	.	.	.	.	.	R	T	L	F	L	G	Y	A	V	A	G	Q	R	L	K	A	Q	F	A	Q	Q	G	R	V	V	D	A	S	H	P	L	F	V	Y
Template Known Secondary structure					T	T							S	S		T	T												T		T	T						.	.	.	.	.	.	.	.	.	.									T													T				S	S	S	S
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.
Template SS confidence
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.											.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.						.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure																																																								.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.
Query Sequence		L	Q	A	G	V	G	A	M	A	G	G	V	L	G	Y	L	V	D	V	Y	S	P	Q	N	L	H	S	I	I	V	E	P	D	K	A	D	C	I	Y	R	S	G	V	K	G	D	I	V	N	V	G	G	D	M	.	.	.	.	.	A	T	I	M	A	G	L	A	C	G	E	P	N	P	L	G	W	E	I	L	R
Query Conservation																																																								.	.	.	.	.
Alig confidence																					.																																			.	.	.	.	.
Template Conservation																					.
Template Sequence		L	P	C	G	V	G	G	G	P	G	G	V	A	F	G	L	K	L	A	.	F	G	D	N	V	H	C	F	F	A	E	P	T	H	S	P	C	M	L	L	G	V	Y	T	G	L	H	D	A	I	S	V	Q	D	I	G	I	D	N	L	T	A	A	D	G	L	A	V	G	R	A	S	G	F	V	G	R	A	M	E
Template Known Secondary structure					S	S	S														.		G	G	G									T	T											S		G	G	G			S	T	T	T	T						S		G	G	G			S	S										G
Template Predicted Secondary structure																					.
Template SS confidence
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.		.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.		.	.	.	.	.	.	.	.	370	.	.	.	.	.	.		.	.	.	380	.
Predicted Secondary structure																																																												.																.
Query SS confidence																																																												.																.
Query Sequence		N	C	A	T	Q	F	I	S	C	Q	D	S	V	A	A	L	G	M	R	V	L	G	N	P	Y	G	N	D	P	R	I	I	S	G	E	S	G	A	V	G	L	G	V	L	A	A	V	H	Y	H	P	Q	R	Q	S	L	M	E	.	K	L	A	L	N	K	D	A	V	V	L	V	I	S	T	.	E	G	D	T	D
Query Conservation																																																												.																.
Alig confidence																												.	.	.	.																													.																.
Template Conservation																												.	.	.	.
Template Sequence		R	L	L	D	G	L	Y	T	L	D	D	Q	T	M	Y	D	M	L	G	W	L	A	Q	E	E	G	.	.	.	.	I	R	L	E	P	S	A	L	A	G	M	A	G	P	Q	R	I	C	A	S	V	A	Y	Q	Q	R	H	G	F	S	Q	T	Q	L	G	N	A	T	H	L	V	W	A	T	G	G	G	M	V	P
Template Known Secondary structure		G	G		S																							.	.	.	.					G	G	G	G	G	G	G	G															T	T								T									B		T	T
Template Predicted Secondary structure																												.	.	.	.
Template SS confidence
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.					.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
		382	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	K	H	Y	R	E	V	V	W	E	G	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	D	E	M	E	Q	Y	L	A	K	G	R
Template Known Secondary structure										T	T
Template Predicted Secondary structure
Template SS confidence
		429	430	.	.	.	.	.	.	.	.	.	440

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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