Job Description P66899 Confidence 24.29% Date Thu Jan 5 12:10:21 GMT 2012 Rank 207 Aligned Residues 143 % Identity 13% Template c3ketA_ PDB info PDB header:transcription/dna Chain: A: PDB Molecule:redox-sensing transcriptional repressor rex; PDBTitle: crystal structure of a rex-family transcriptional regulatory protein2 from streptococcus agalactiae bound to a palindromic operator Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.			.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure																					.	.
Query SS confidence																					.	.
Query Sequence		F	S	Q	S	Q	A	K	L	A	R	Q	F	H	Q	K	I	A	G	Y	.	.	R	P	T	P	L	C	A	L	D	D	L	A	N	L	F	G	V	K	K	I	L	V	K	D	E	S	K	R	F	G	L	N	A	F	K	M	L	G	G	A	Y	A	I	A	Q	L	L	C	E	K	Y	H	L	D	I	E	T	L	S
Query Conservation																					.	.
Alig confidence																					.	.																										.				.																				.	.	.	.	.	.	.	.	.	.
Template Conservation																																																.				.																				.	.	.	.	.	.	.	.	.	.
Template Sequence		I	P	K	A	T	A	K	R	L	S	L	Y	Y	R	I	F	K	R	F	N	T	D	G	I	E	K	A	S	S	K	Q	I	A	D	A	L	G	I	D	S	A	T	V	R	R	D	.	F	S	Y	.	F	G	E	L	G	R	R	G	F	G	Y	D	V	K	K	L	M	N	F	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			S																				T	T														T	S									.			T	.	T				S	B	T	T	T	B										.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																.				.																				.	.	.	.	.	.	.	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.		.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
		102	.	.	.	.	.			.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.																			.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure								.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	E	H	L	K	N	.	.	A	I	G	E	K	M	T	F	A	T	T	T	D	G	N	H	G	R	G	V	A	W	A	A	Q	Q	L	G	Q	N	A	V	I	Y	M	P	K	G	S	A	Q	E	R	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	A	I	L	N	L	G	A	E	C
Query Conservation								.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.				.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	F	A	E	I	L	N	D	H	S	T	T	N	V	M	L	V	G	C	G	N	I	G	R	A	L	L	H	Y	R	F	H	D	R	N	K	M	Q	I	S	M	A	F	D	L	D	S	N	D	L	V	G	K	T	T	E	D	G	I	P	V	Y	G	I	S	T	I	N	D	H	L	I	D	S	D	I	E	T
Template Known Secondary structure		.	.	.					T	T		S	S										S								T	S		G	G	G	T	S	S										T	T	S	T	T	T	T	S	B		T	T	S		B				G	G	G					T	S	S	S
Template Predicted Secondary structure		.	.	.
Template SS confidence
					75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	T	D	M	N	Y	D	D	T	V	R	L	T	M	Q	H	A	Q	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	I	L	T	V	P	S	T	E	A	Q	E	V	A	D	I	L	V	K	A
Template Known Secondary structure						S		G	G	G											T
Template Predicted Secondary structure
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions