Job Description P66899 Confidence 44.88% Date Thu Jan 5 12:10:21 GMT 2012 Rank 112 Aligned Residues 123 % Identity 17% Template c3k8zD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:nad-specific glutamate dehydrogenase; PDBTitle: crystal structure of gudb1 a decryptified secondary glutamate2 dehydrogenase from b. subtilis Resolution 2.40 Å

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		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	G	G	A	Y	A	I	A	Q	L	L	C	E	K	Y	H	L	D	I	E	T	L	S	F	E	H	L	K	N	A	I	G	E	K	M	T	F	A	T	T	T	D	G	N	H	G	R	G	V	A	W	A	A	Q	Q	L	G	Q	N	A	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	G	V	T	I	C	I	K	E	A	A	K	K	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	I	D	I	K	G	A	R	V	V	V	Q	G	F	G	N	A	G	S	Y	L	A	K	F	M	H	D	A	G	A	K	V	V	G	I	S	D	A	Y	G	G	L	Y	D	P	E	G	L	D	I	D	C
Template Known Secondary structure															T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T			G	G	G									S	S												T	T									S	S						T	T
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		201	.	.	.	.	.	.	.	.	210	.	.	.	.															.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
			140	.	.	.	.	.	.	.		.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure		.									.
Query SS confidence		.									.
Query Sequence		.	I	Y	M	P	K	G	S	A	.	Q	E	R	V	D	A	I	L	N	L	G	A	E	C	I	V	T	D	M	N	Y	D	D	T	V	R	L	T	M	Q	H	A	Q	Q	H	G	W	E	V	V	Q	D	T	A	W	E	G	Y	T	K	I	P	T	W	I	M	Q	G	Y	A	T	L	A	D	E	A	V	E	Q	M
Query Conservation		.									.
Alig confidence		.									.																					.																											.	.	.	.	.	.	.	.	.
Template Conservation																																.																											.	.	.	.	.	.	.	.	.
Template Sequence		D	I	L	V	P	A	A	I	E	N	Q	I	T	E	E	N	A	H	N	I	R	A	K	I	V	V	E	A	A	N	.	G	P	T	T	L	E	G	T	K	I	L	S	D	R	D	I	L	L	V	P	D	V	L	A	S	A	.	.	.	.	.	.	.	.	.	G	G	V	T	V	S	Y	F	E	W	V	Q	N	N
Template Known Secondary structure								S		S		S	B		T	T	T	G	G	G				S						S	S	.	S		B											T	T										T	T	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																.																											.	.	.	.	.	.	.	.	.
Template SS confidence
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.		.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.										.	.	.	.	.	.	.	.	360	.	.	.	.	.
		218	.	220	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	M	G	V	T	P	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	G	F	Y	W	S	E	E
Template Known Secondary structure			T
Template Predicted Secondary structure
Template SS confidence
		366	.	.	.	370	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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