Job Description P66899 Confidence 81.57% Date Thu Jan 5 12:10:21 GMT 2012 Rank 49 Aligned Residues 237 % Identity 15% Template c2csuB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:457aa long hypothetical protein; PDBTitle: crystal structure of ph0766 from pyrococcus horikoshii ot3 Resolution 2.20 Å

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		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.									.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.															.	.	.	190	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	V	I	Y	M	P	K	G	S	A	Q	E	R	V	D	A	I	L	N	L	G	A	E	C	I	V	T	.	.	.	.	.	.	.	.	D	M	N	Y	D	D	T	V	R	L	T	M	Q	H	A	Q	Q	H	G	W	E	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	Q	D	T	A	W	E	G	Y
Query Conservation																													.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	I	I	V	V	P	K	R	F	V	K	D	T	L	I	Q	C	G	E	K	G	V	K	G	V	V	I	I	T	A	G	F	G	E	T	G	E	E	G	K	R	E	E	K	E	L	V	E	I	A	H	K	Y	G	X	R	I	I	G	P	N	C	V	G	I	X	N	T	H	V	D	L	N	A	T	F	I	T	V	A
Template Known Secondary structure						S		G	G	G												T										S	S	G	G	G																		T	T						S	S	S						G	G	G	T					S	S
Template Predicted Secondary structure
Template SS confidence
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.							.	.	.	.	.	.	.
Predicted Secondary structure																																																																					.	.	.	.	.	.
Query SS confidence																																																																					.	.	.	.	.	.
Query Sequence		T	K	I	P	T	W	I	M	Q	G	Y	A	T	L	A	D	E	A	V	E	Q	M	R	E	M	G	V	T	P	T	H	V	L	L	Q	A	G	V	G	A	M	A	G	G	V	L	G	Y	L	V	D	V	Y	S	P	Q	N	L	H	S	I	I	V	E	P	D	K	.	.	.	.	.	.	A	D	C	I	Y	R	S
Query Conservation																																																																					.	.	.	.	.	.
Alig confidence																																					.	.																															.	.	.	.	.	.
Template Conservation																																					.	.
Template Sequence		K	K	G	N	V	A	F	I	S	Q	S	G	A	L	G	A	G	I	V	Y	K	T	I	K	E	D	I	G	F	S	K	F	I	S	V	.	.	G	N	X	A	D	V	D	F	A	E	L	X	E	Y	L	A	D	T	E	E	D	K	A	I	A	L	Y	I	E	G	V	R	N	G	K	K	F	X	E	V	A	K	R
Template Known Secondary structure					S						S															T	T				S						.	.	T	T		S	S	S											T		S	S									S			S
Template Predicted Secondary structure																																					.	.
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.			.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.			.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure																																																												.	.
Query SS confidence																																																												.	.
Query Sequence		G	V	K	G	D	I	V	N	V	G	G	D	M	A	T	I	M	A	G	L	A	C	G	E	P	N	P	L	G	W	E	I	L	R	N	C	A	T	Q	F	I	S	C	Q	D	S	V	A	A	L	G	M	R	V	L	G	N	P	.	.	Y	G	N	D	P	R	I	I	S	G	E	S	G	A	V	G	L	G	V	L
Query Conservation																																																												.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	T	K	K	K	P	I	I	A	L	K	A	G	K	K	.	.	.	.	.	.	.	.	.	.	.	.	.	I	Y	E	A	A	F	K	Q	S	G	V	L	V	A	N	T	I	D	E	X	L	S	X	A	R	A	F	S	Q	P	L	P	R	G	N	K	V	A	I	X	T	N	A	G	G	P	G	V	L	T	A	D
Template Known Secondary structure			T	T	T	S											.	.	.	.	.	.	.	.	.	.	.	.	.										T					S	S										G	G	G	S				S	S								S
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240														.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.							.	.	.	.	.	370	.	.	.		.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.										.
Query SS confidence																			.	.	.	.	.	.										.
Query Sequence		A	A	V	H	Y	H	P	Q	R	Q	S	L	M	E	K	L	A	.	.	.	.	.	.	L	N	K	D	A	V	V	L	V	.	I	S	T	E	G	D	T	D	V	K	H	Y	R	E	V	V
Query Conservation																			.	.	.	.	.	.										.
Alig confidence																			.	.	.	.	.	.										.
Template Conservation
Template Sequence		E	L	D	K	R	G	L	K	L	A	T	L	E	E	K	T	I	E	E	L	R	S	F	L	P	P	X	A	A	V	K	N	P	V	D	X	I	A	S	A	R	G	E	D	Y	Y	R	T	A
Template Known Secondary structure				T	T	T	T																		S		T	T				S	S						T	T
Template Predicted Secondary structure
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions