Job Description P66899 Confidence 100.00% Date Thu Jan 5 12:10:21 GMT 2012 Rank 13 Aligned Residues 328 % Identity 21% Template c1x1qA_ PDB info PDB header:lyase Chain: A: PDB Molecule:tryptophan synthase beta chain; PDBTitle: crystal structure of tryptophan synthase beta chain from thermus2 thermophilus hb8 Resolution 2.50 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Q	S	Q	A	K	L	A	R	Q	F	H	Q	K	I	A	G	Y	R	P	T	P	L	C	A	L	D	D	L	A	N	L	F	G	V	K	K	I	L	V	K	D	E	S	K	R	F	G	L	N	A	F	K	M	L	G	G	A	Y	A	I	A	Q	L	L	C	E	K	Y	H	L	D	I	E	T	L	S	F	E	H
Query Conservation
Alig confidence																			.																													.																						.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.																													.																						.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	P	A	F	L	E	E	L	D	H	Y	L	R	Q	F	A	G	.	R	P	T	P	L	Y	H	A	K	R	L	S	E	Y	W	G	G	A	Q	V	F	L	K	R	E	D	L	L	.	H	T	G	A	H	K	I	N	N	T	L	G	Q	A	L	L	A	R	R	X	G	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																T	T		.		S														T	S	S							G	G	G	S	.	G	G	G	B	T	T															T	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																			.																													.																						.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.		.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.		.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.				.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.					.	170	.	.	.	.	.	.	.
Predicted Secondary structure																																							.	.	.																												.	.	.	.
Query SS confidence																																							.	.	.																												.	.	.	.
Query Sequence		L	K	N	A	I	G	E	K	M	T	F	A	T	T	T	D	G	N	H	G	R	G	V	A	W	A	A	Q	Q	L	G	Q	N	A	V	I	Y	.	.	.	M	P	K	G	S	A	Q	E	R	V	D	A	I	L	N	L	G	A	E	C	I	V	T	D	M	N	Y	.	.	.	.	D	D	T	V	R	L	T	M	Q
Query Conservation																																							.	.	.																												.	.	.	.
Alig confidence		.	.	.	.	.	.																																.	.	.																												.	.	.	.
Template Conservation		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	K	R	R	V	I	A	E	T	G	A	G	Q	H	G	V	S	V	A	T	V	A	A	L	F	G	L	E	C	V	V	Y	X	G	E	E	D	V	R	R	Q	A	L	N	V	F	R	X	K	L	L	G	A	E	V	R	P	V	A	A	G	S	R	T	L	K	D	A	T	N	E	A	I	R	D
Template Known Secondary structure		.	.	.	.	.	.									S	S	S														T														T											T	T								S	T	T	S	S
Template Predicted Secondary structure		.	.	.	.	.	.
Template SS confidence
								125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure																																												.
Query SS confidence																																												.
Query Sequence		H	A	Q	Q	H	G	W	E	V	V	Q	D	T	A	W	E	G	Y	T	K	I	P	T	W	I	M	Q	G	Y	A	T	L	A	D	E	A	V	E	Q	M	R	E	.	M	G	V	T	P	T	H	V	L	L	Q	A	G	V	G	A	M	A	G	G	V	L	G	Y	L	V	D	V	Y	S	P	Q	N	L	H	S	I
Query Conservation																																												.
Alig confidence																																												.																													.
Template Conservation																																																																									.
Template Sequence		W	I	T	N	V	R	T	T	F	Y	I	L	G	S	V	V	G	P	H	P	Y	P	X	X	V	R	D	F	Q	S	V	I	G	E	E	V	K	R	Q	S	L	E	L	F	G	R	L	P	D	A	L	I	A	A	V	G	G	G	S	N	A	I	G	L	F	A	P	F	A	Y	L	.	P	E	G	R	P	K	L	I
Template Known Secondary structure					T	T	T	T								S	S	S	S	T	T										T															S	S			S							S	S	S	S											T	S	.		T	T
Template Predicted Secondary structure																																																																									.
Template SS confidence
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.		270	.	.	.	.	.	.	.
		257	.	.	260	.	.					.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure								.	.	.	.
Query SS confidence								.	.	.	.
Query Sequence		I	V	E	P	D	K	.	.	.	.	A	D	C	I	Y	R	S	G	V	K	G	D	I	V	N	V	G	G	D	M	A	T	I	M	A	G	L	A	C	G	E	P	N	P	L	G	W	E	I	L	R	N	C	A	T	Q	F	I	S	C	Q	D	S	V	A	A	L	G	M	R	V	L	G	N	P	Y	G	N	D	P
Query Conservation								.	.	.	.
Alig confidence								.	.	.	.																		.	.																																																	.	.	.
Template Conservation																													.	.																																																	.	.	.
Template Sequence		G	V	E	A	A	G	E	G	L	S	T	G	R	H	A	A	S	I	G	A	G	K	R	G	V	L	H	.	.	G	S	Y	X	Y	L	L	Y	D	Y	P	G	V	G	P	E	H	S	Y	Y	A	D	A	G	V	A	E	Y	A	S	V	T	D	E	E	A	L	E	G	F	K	L	L	A	R	L	E	G	.	.	.
Template Known Secondary structure								T	T	S	S	S										T						T	.	.	T					B					S	B												T	S																							S	.	.	.
Template Predicted Secondary structure																													.	.																																																	.	.	.
Template SS confidence
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.			.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.		.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure																																															.
Query SS confidence																																															.
Query Sequence		R	I	I	S	G	E	S	G	A	V	G	L	G	V	L	A	A	V	H	Y	H	P	Q	R	Q	S	L	M	E	K	L	A	L	N	K	D	A	V	V	L	V	I	S	T	E	.	G	D	T	D	V	K	H	Y	R	E	V	V	W
Query Conservation																																															.
Alig confidence		.																					.	.	.	.	.	.	.	.	.	.	.														.
Template Conservation		.																					.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	I	I	P	A	L	E	S	A	H	A	I	A	Y	A	A	K	V	V	P	E	.	.	.	.	.	.	.	.	.	.	.	X	D	K	D	Q	V	V	V	I	N	L	S	G	R	G	D	K	D	V	T	E	V	X	R	L	L	G
Template Known Secondary structure		.			B															T	T	T	.	.	.	.	.	.	.	.	.	.	.	S		T	T									B	B	G	G	G	T							T
Template Predicted Secondary structure		.																					.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
			369	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.												.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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