Job Description Q5H778 Confidence 100.00% Date Thu Jan 5 12:37:23 GMT 2012 Rank 2 Aligned Residues 397 % Identity 17% Template c3lrcC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:arginine/agmatine antiporter; PDBTitle: structure of e. coli adic (p1) Resolution 4.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	K	S	L	K	L	W	Q	V	V	M	M	G	L	A	Y	L	T	P	M	T	V	F	D	T	F	G	I	V	S	G	I	S	D	G	H	V	P	A	S	Y	L	L	A	L	A	G	V	L	F	T	A	I	S	Y	G	K	L	V	R	Q	F	P	E	A	G	S	A	Y	T	Y	A	Q	K	S	I	N	P	H	V
Query Conservation
Alig confidence																																					.
Template Conservation																																					.
Template Sequence		A	H	K	V	G	L	I	P	V	T	L	M	V	S	G	N	I	M	G	S	G	V	F	L	L	P	A	N	L	A	S	T	G	G	I	.	A	I	Y	G	W	L	V	T	I	I	G	A	L	G	L	S	M	V	Y	A	K	M	S	F	L	D	P	S	P	G	G	S	Y	A	Y	A	R	R	C	F	G	P	F	L
Template Known Secondary structure			S	S													T	T	S	S	S	S	T	T	T					T	T	S	S				.		S																						T	T				S	S		T	T	T	G	G	G	G	T	T
Template Predicted Secondary structure																																					.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.		.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.					.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure																																		.	.	.	.
Query SS confidence																																		.	.	.	.
Query Sequence		G	F	M	V	G	W	S	S	L	L	D	Y	L	F	L	P	M	I	N	V	L	L	A	K	I	Y	L	S	A	L	F	P	.	.	.	.	E	V	P	P	W	V	W	V	V	T	F	V	A	I	L	T	A	A	N	L	K	S	V	N	L	V	A	N	F	N	T	L	F	V	L	V	Q	I	S	I	M	V	V	F
Query Conservation																																		.	.	.	.
Alig confidence																																		.	.	.	.
Template Conservation
Template Sequence		G	Y	Q	T	N	V	L	Y	W	L	A	C	W	I	G	N	I	A	M	V	V	I	G	V	G	Y	L	S	Y	F	F	P	I	L	K	D	P	L	V	L	T	I	T	C	V	V	V	L	W	I	F	V	L	L	N	I	V	G	P	K	M	I	T	R	V	Q	A	V	A	T	V	L	A	L	I	P	I	V	G	I
Template Known Secondary structure											T	T	T	T											T	G	G	G	S	S	S	S					S	S	S																			S		S
Template Predicted Secondary structure
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	F	L	V	V	Q	G	L	H	K	G	E	G	V	G	T	V	W	S	L	Q	P	F	I	S	E	N	A	H	L	I	P	I	I	T	G	A	T	I	V	C	F	S	F	L	G	F	D	A	V	T	T	L	S	E	E	T	P	D	A	A	R	V	I	P	K	A	I	F	L	T	A	V	Y	G	G	V	I	F	I
Query Conservation
Alig confidence													.	.	.	.	.
Template Conservation													.	.	.	.	.
Template Sequence		A	V	F	G	W	F	W	F	R	G	E	.	.	.	.	.	T	Y	M	A	A	W	N	V	S	G	L	G	T	F	G	A	I	Q	S	T	L	N	V	T	L	W	S	F	I	G	V	E	S	A	S	V	A	A	G	V	V	K	N	P	K	R	N	V	P	I	A	T	I	G	G	V	L	I	A	A	V	C	Y	V
Template Known Secondary structure								S			S	S	.	.	.	.	.							S		S	S	S						T								S	T	T		T	T	G	G	G					G	G	G	S	S	S
Template Predicted Secondary structure													.	.	.	.	.
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.						.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	S	F	F	M	Q	L	F	F	P	D	I	S	R	F	K	D	P	D	A	A	L	P	E	I	A	L	Y	V	G	G	K	L	F	Q	S	I	F	L	C	T	T	F	V	N	T	L	A	S	G	L	A	S	H	A	S	V	S	R	L	L	Y	V	M	G	R	D	N	V	F	P	E	R	V	F	G	Y	V	H
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.
Template Sequence		L	S	T	T	A	I	M	G	M	I	P	N	T	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	I	V	S	F	C	A	A	A	G	C	L	G	S	L	G	G	W	T	L	L	A	G	Q	T	A	K	A	A	A	D	D	G	L	F	P	.	P	I	F	A	R	V	N
Template Known Secondary structure				T	T				S						T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										T																T	T	S	S	T	T	T	S	S		S		.
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.																						.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.		.	.	.	.	.	.	.
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.									.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.
Query Sequence		P	K	W	R	T	P	A	L	N	V	I	M	V	G	I	V	A	L	S	A	L	F	F	.	.	.	.	.	.	.	.	D	L	V	T	A	T	A	L	I	N	F	G	A	L	V	A	F	T	F	V	N	L	S	V	F	N	H	F	W	R	R	K	G	M	N	K	S	W	K	D	H	F	H	Y	L	L	M	P	L
Query Conservation																									.	.	.	.	.	.	.	.
Alig confidence		.																							.	.	.	.	.	.	.	.																																						.	.	.	.	.
Template Conservation		.																																																																				.	.	.	.	.
Template Sequence		.	K	A	G	T	P	V	A	G	L	I	I	V	G	I	L	M	T	I	F	Q	L	S	S	I	S	P	N	A	T	K	E	F	G	L	V	S	S	V	S	V	I	F	T	L	V	P	Y	L	Y	T	C	A	A	L	L	L	L	G	H	G	H	F	G	K	A	R	P	.	.	.	.	.	A	Y	L	A	V	T	T
Template Known Secondary structure		.	S	S	S	S																	T	T	S	S	S		S	S	S	S	S			S	S	T	T						T	T													T		T	T		S	S	S				.	.	.	.	.
Template Predicted Secondary structure		.																																																																				.	.	.	.	.
Template SS confidence
			319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.						.	.	.	.	390	.	.
		425	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	A	L	T	V	G	V	L	W	V	N	L	E	S	T	S	L	T	L	G	L	V	W	A	S	L	G	G	A	Y	L	W	Y	L	I	R	R	Y	R	K	V	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	A	F	L	Y	C	I	W	A	V	V	G	S	G	A	K	E	V	M	W	S	F	V	T	L	M	V	I	T	A	M	Y	A	L	N	Y	N	R	L	H	K	N	P
Template Known Secondary structure													S	S																		T	T	T	S						S	S
Template Predicted Secondary structure
Template SS confidence
		393	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.