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Job DescriptionQ5H778
Confidence6.76%DateThu Jan 5 12:37:23 GMT 2012
Rank31Aligned Residues137
% Identity6%Templatec2gfpA_
PDB info PDB header:membrane proteinChain: A: PDB Molecule:multidrug resistance protein d; PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli
Resolution3.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   343......350.........360.........370..... ....380.........390.........400.........410.........420.
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Query Sequence  FPERVFGYVHPKWRTPALNVIMVGIVALSALFF. DLVTATALINFGALVAFTFVNLSVFNHFWRRKGMNKSWKDHFHYLL
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Template Sequence  LFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMG
Template Known Secondary structure  TTTTS





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   61........70.........80.........90.........100.........110.........120.........130.........140
 
   422.......430.........440.........450.........460.........470.........
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Query Sequence  MPLVGALTVGVLWVNLESTSLTLGLVWASLGGAYLWYLIRRYRKVPLYDGDRTPVSET
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Template Sequence  ILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPRTRLLT
Template Known Secondary structure  SS





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   141........150.........160.........170.........180.........190........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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