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Job DescriptionP61316
Confidence99.22%DateThu Jan 5 12:07:20 GMT 2012
Rank4Aligned Residues166
% Identity12%Templatec3bk5A_
PDB info PDB header:structural genomics, unknown functionChain: A: PDB Molecule:putative outer membrane lipoprotein-sorting protein; PDBTitle: crystal structure of putative outer membrane lipoprotein-sorting2 protein domain from vibrio parahaemolyticus
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   24.....30.........40.........50.........60... ......70...... ...80.. .......90...
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Query Sequence  ASDLKSRLDKVSSFHASFTQKVTDGSGAAVQEGQGDLWVK. . RPNLFNWHMTQPD. . . ESILVS. . . . . DGKTLWFYNPF
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Template Sequence  AQERKARDEGWGDSIATXEXILKNAQESSTRLXRLKSLEVEGDGDKGLTIFDQPRDVTGTAFLNHSHTIGADDQWLYLPA
Template Known Secondary structure  TT










TTS

STTTTT


SSS

TT
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   7..10.........20.........30.........40.........50.........60.........70.........80......
 
   94.....100.........110....... ..120.........130. ........140.........150...... ...160.
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Query Sequence  VEQATATWLKDATGNTPFMLIARN. . QSSDWQQYNIKQNG. . . . . . . . . DDFVLTPKASNGNLKQFTINVGRDG. TIHQF
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Template Sequence  LKRVKRISSRNKSGPFXGSEFAYEDLSSFEIEKYRFNHLKDEKFNGQDVFVLEQIPTDKNSGYTKQVVWLDKAHYRPLKV
Template Known Secondary structure  TT

GGGTTSBSTTSS
BGGGGS


GGGTTS
TTSSTTT

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   88.90.........100.........110.........120.........130.........140.........150.........160.......
 
   162...... .170....... ..180.........
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Query Sequence  SAVEQDD. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . QRSSYQLKS. QQNGAVDAAKFT
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Template Sequence  EFYDRKGALLKTLTFANYKQYLDKYWRAHTXAXTNHQTGKSTELNTSDLRFQTGLEENDFN
Template Known Secondary structure  TTS
TTTTTT






GGGG
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   168.170.........180.........190.........200.........210.........220........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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