Job Description P61316 Confidence 99.22% Date Thu Jan 5 12:07:20 GMT 2012 Rank 4 Aligned Residues 166 % Identity 12% Template c3bk5A_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative outer membrane lipoprotein-sorting protein; PDBTitle: crystal structure of putative outer membrane lipoprotein-sorting2 protein domain from vibrio parahaemolyticus Resolution 2.00 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.			.	.	.	.	.	.	70	.	.	.	.	.	.				.	.	.	80	.	.						.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure																																										.	.														.	.	.							.	.	.	.	.
Query SS confidence																																										.	.														.	.	.							.	.	.	.	.
Query Sequence		A	S	D	L	K	S	R	L	D	K	V	S	S	F	H	A	S	F	T	Q	K	V	T	D	G	S	G	A	A	V	Q	E	G	Q	G	D	L	W	V	K	.	.	R	P	N	L	F	N	W	H	M	T	Q	P	D	.	.	.	E	S	I	L	V	S	.	.	.	.	.	D	G	K	T	L	W	F	Y	N	P	F
Query Conservation																																										.	.														.	.	.							.	.	.	.	.
Alig confidence																																										.	.														.	.	.							.	.	.	.	.
Template Conservation
Template Sequence		A	Q	E	R	K	A	R	D	E	G	W	G	D	S	I	A	T	X	E	X	I	L	K	N	A	Q	E	S	S	T	R	L	X	R	L	K	S	L	E	V	E	G	D	G	D	K	G	L	T	I	F	D	Q	P	R	D	V	T	G	T	A	F	L	N	H	S	H	T	I	G	A	D	D	Q	W	L	Y	L	P	A
Template Known Secondary structure								T	T																																	T	T	S											S	T	T	T	T	T									S	S	S									T	T
Template Predicted Secondary structure
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.			.	.	120	.	.	.	.	.	.	.	.	.	130	.										.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.		.	.	.	160	.
Predicted Secondary structure																										.	.															.	.	.	.	.	.	.	.	.																										.
Query SS confidence																										.	.															.	.	.	.	.	.	.	.	.																										.
Query Sequence		V	E	Q	A	T	A	T	W	L	K	D	A	T	G	N	T	P	F	M	L	I	A	R	N	.	.	Q	S	S	D	W	Q	Q	Y	N	I	K	Q	N	G	.	.	.	.	.	.	.	.	.	D	D	F	V	L	T	P	K	A	S	N	G	N	L	K	Q	F	T	I	N	V	G	R	D	G	.	T	I	H	Q	F
Query Conservation																										.	.															.	.	.	.	.	.	.	.	.																										.
Alig confidence																										.	.															.	.	.	.	.	.	.	.	.																										.
Template Conservation
Template Sequence		L	K	R	V	K	R	I	S	S	R	N	K	S	G	P	F	X	G	S	E	F	A	Y	E	D	L	S	S	F	E	I	E	K	Y	R	F	N	H	L	K	D	E	K	F	N	G	Q	D	V	F	V	L	E	Q	I	P	T	D	K	N	S	G	Y	T	K	Q	V	V	W	L	D	K	A	H	Y	R	P	L	K	V
Template Known Secondary structure		T	T							G	G	G	T	T	S	B	S	T	T	S	S		B	G	G	G	G	S				G	G	G												T	T											S		T	T	S	S										T	T	T
Template Predicted Secondary structure
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		162	.	.	.	.	.	.																																	.	170	.	.	.	.	.	.	.		.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Query Sequence		S	A	V	E	Q	D	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	R	S	S	Y	Q	L	K	S	.	Q	Q	N	G	A	V	D	A	A	K	F	T
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template Conservation
Template Sequence		E	F	Y	D	R	K	G	A	L	L	K	T	L	T	F	A	N	Y	K	Q	Y	L	D	K	Y	W	R	A	H	T	X	A	X	T	N	H	Q	T	G	K	S	T	E	L	N	T	S	D	L	R	F	Q	T	G	L	E	E	N	D	F	N
Template Known Secondary structure						T	T	S															T	T	T												T	T	T																			G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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