Job Description P76128 Confidence 100.00% Date Thu Jan 5 12:19:19 GMT 2012 Rank 8 Aligned Residues 481 % Identity 23% Template d1xoca1 SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.55

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	V	P	K	D	M	L	V	I	G	K	A	A	D	P	Q	T	L	D	P	A	V	T	I	D	N	N	D	W	T	V	T	Y	P	S	Y	Q	R	L	V	Q	Y	K	T	D	G	D	K	G	S	T	D	V	E	G	D	L	A	S	S	W	K	A	S	D	D	Q	K	E	W	T	F	T	L	K	D	N	A	K
Query Conservation
Alig confidence																																																	.	.	.	.	.
Template Conservation																																																	.	.	.	.	.
Template Sequence		K	P	Q	Q	G	G	D	L	V	V	G	S	I	G	E	P	T	L	F	N	S	L	Y	S	T	D	D	A	S	T	D	I	E	N	M	L	Y	S	F	L	T	K	T	D	E	K	L	.	.	.	.	.	N	V	K	L	S	L	A	E	S	I	K	E	L	D	G	G	L	A	Y	D	V	K	I	K	K	G	V	K
Template Known Secondary structure														S	S					S		T	T	T			S														S					T	T	S	.	.	.	.	.					S	S								G	G	G	T								S	S		B
Template Predicted Secondary structure																																																	.	.	.	.	.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.						.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.			130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure																											.	.																																																					.
Query SS confidence																											.	.																																																					.
Query Sequence		F	A	D	G	T	P	V	T	A	E	A	V	K	L	S	F	E	R	L	L	K	I	G	Q	G	.	.	P	A	E	A	F	P	K	D	L	K	I	D	A	P	D	E	H	T	V	K	F	T	L	S	Q	P	F	A	P	F	L	Y	T	L	A	N	D	G	A	S	I	I	N	P	A	V	L	K	E	H	A	A	.
Query Conservation																											.	.																																																					.
Alig confidence																											.	.																																						.															.
Template Conservation																																																																		.
Template Sequence		F	H	D	G	K	E	L	T	A	D	D	V	V	F	T	Y	S	V	P	L	S	K	D	Y	K	G	E	R	G	S	T	Y	E	M	L	K	S	V	E	K	K	G	D	Y	E	V	L	F	K	L	K	Y	K	D	G	N	F	Y	N	N	A	L	D	S	.	T	A	I	L	P	K	H	I	L	G	N	V	P	I	A
Template Known Secondary structure			T	T	S		B												G	G	G	S	T	T				S		G	G	G	T	T	T									T	T							S	S			T					T					.										T	T	S		G	G
Template Predicted Secondary structure																																																																		.
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.		.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
			182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	D	D	A	R	G	F	L	A	Q	N	T	A	G	S	G	P	F	M	L	K	S	W	Q	K	G	Q	Q	L	V	L	V	P	N	P	H	Y	P	G	N	K	P	N	F	K	R	V	S	V	K	I	I	G	E	S	A	S	R	R	L	Q	L	S	R	G	D	I	D	I	A	D	A	L	P	V	D	Q	L	N	A
Query Conservation		.
Alig confidence		.																																																																						.
Template Conservation																																																																								.
Template Sequence		D	L	E	E	N	E	F	N	R	K	K	P	I	G	S	G	P	F	K	F	K	E	W	K	Q	G	Q	Y	I	K	L	E	A	N	D	D	Y	F	E	G	R	P	Y	L	D	T	V	T	Y	K	V	I	P	D	A	N	A	A	E	A	Q	L	Q	A	G	D	I	N	F	F	.	N	V	P	A	T	D	Y	K	T
Template Known Secondary structure		G	T	T	T	S	G	G	G	T	T					S	S	S								T	T	T								T	T		T	T				S	S	S								S												T	S			B		.				G	G	G
Template Predicted Secondary structure																																																																								.
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240		.	.	.	.	.	.	.	.	.
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.			.	.
Predicted Secondary structure																																																																														.	.
Query SS confidence																																																																														.	.
Query Sequence		L	K	Q	E	N	K	V	N	V	A	E	Y	P	S	L	R	V	T	Y	L	Y	L	N	N	S	K	A	P	L	N	Q	A	D	L	R	R	A	I	S	W	S	T	D	Y	Q	G	M	V	N	G	I	L	S	G	N	G	K	Q	M	R	G	P	I	P	E	G	M	W	G	Y	D	A	T	A	M	Q	.	.	Y	N
Query Conservation																																																																														.	.
Alig confidence																																																																														.	.
Template Conservation
Template Sequence		A	E	K	F	N	N	L	K	I	V	T	D	L	A	L	S	Y	V	Y	I	G	W	N	E	K	N	E	L	F	K	D	K	K	V	R	Q	A	L	T	T	A	L	D	R	E	S	I	V	S	Q	V	L	D	G	D	G	E	V	A	Y	I	P	E	S	P	L	S	W	N	Y	P	K	D	I	D	V	P	K	F	E
Template Known Secondary structure			T	T	S	T	T									S									T	T	S	G	G	G												T											S	T	T		S					S	S	S		T	T	S	T	T	S		T	T
Template Predicted Secondary structure
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
		339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.														.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.			.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.																																															.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.																																															.	.
Query Sequence		H	D	E	T	K	A	K	A	E	W	D	K	V	T	S	K	P	T	.	.	.	.	.	.	.	.	.	.	.	.	.	S	L	T	F	L	Y	S	D	N	D	P	N	W	E	P	I	A	L	A	T	Q	S	S	L	N	K	L	G	I	I	V	K	L	E	K	L	A	N	A	T	M	R	D	R	V	G	.	.	K
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.																																															.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.																																															.	.
Template Conservation
Template Sequence		Y	N	E	K	K	A	K	Q	M	L	A	E	A	G	W	K	D	T	N	G	D	G	I	L	D	K	D	G	K	K	F	S	F	T	L	K	T	N	Q	G	N	K	V	R	E	D	I	A	V	V	V	Q	E	Q	L	K	K	I	G	I	E	V	K	T	Q	I	V	E	W	S	A	L	V	E	Q	M	N	P	P	N
Template Known Secondary structure														T	T		B		S	S	S	S	S	S				T	T											T	T																	T	T	T																		S	T	T	T
Template Predicted Secondary structure
Template SS confidence
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
		404	.	.	.	.	.	410	.	.	.	.		.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		G	D	Y	D	I	A	I	G	N	W	S	.	P	D	F	A	D	P	Y	M	F	M	N	Y	W	F	E	S	D	K	K	G	L	P	G	N	R	S	F	Y	E	N	S	E	V	D	K	L	L	R	N	A	L	A	T	T	D	Q	T	Q	R	T	R	D	Y	Q	Q	A	Q	K	I	V	I	D	D	A	A	Y	V	Y
Query Conservation													.
Alig confidence													.																.	.	.	.
Template Conservation																													.	.	.	.
Template Sequence		W	D	F	D	A	M	V	M	G	W	S	L	S	T	F	P	D	Q	Y	D	I	F	H	S	S	Q	I	.	.	.	.	K	K	G	L	N	Y	V	W	Y	K	N	A	E	A	D	K	L	M	K	D	A	K	S	I	S	D	R	K	Q	Y	S	K	E	Y	E	Q	I	Y	Q	K	I	A	E	D	Q	P	Y	T	F
Template Known Secondary structure					S										S	S			T					S	G	G	G	T	.	.	.	.	T	T	S	S		T	T															T	T			S																				S
Template Predicted Secondary structure																													.	.	.	.
Template SS confidence
		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.					.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.
		483	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.		.	510	.	.	.	.	.	.
Predicted Secondary structure																												.
Query SS confidence																												.
Query Sequence		L	F	Q	K	N	Y	Q	L	A	M	N	K	E	V	K	G	F	V	F	N	P	M	L	E	Q	V	.	F	N	I	N	T	M	S	K
Query Conservation																												.
Alig confidence																												.
Template Conservation
Template Sequence		L	Y	Y	P	N	N	H	M	A	M	P	E	N	L	E	G	Y	K	Y	H	P	K	R	D	L	Y	N	I	E	K	W	W	L	A	K
Template Known Secondary structure													T	T			S					S	S		T	T	T	T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		486	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520