Job Description P76128 Confidence 100.00% Date Thu Jan 5 12:19:19 GMT 2012 Rank 9 Aligned Residues 477 % Identity 24% Template d1uqwa_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 2.72

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	K	D	M	L	V	I	G	K	A	A	D	P	Q	T	L	D	P	A	V	T	I	D	N	N	D	W	T	V	T	Y	P	S	Y	Q	R	L	V	Q	Y	K	T	D	G	D	K	G	S	T	D	V	E	G	D	L	A	S	S	W	K	A	S	D	D	Q	K	E	W	T	F	T	L	K	D	N	A	K	F	A	D
Query Conservation
Alig confidence																																														.	.	.	.	.
Template Conservation																																														.	.	.	.	.
Template Sequence		A	A	K	D	V	V	V	A	V	G	S	N	F	T	T	L	D	P	Y	D	A	N	D	T	L	S	Q	A	V	A	K	S	F	Y	Q	G	L	F	G	L	D	K	E	X	.	.	.	.	.	K	L	K	N	V	L	A	E	S	Y	T	V	S	D	D	G	I	T	Y	T	V	K	L	R	E	G	I	K	F	Q	D
Template Known Secondary structure											S	S					S		G	G	G			S								T	T	T				S					T	T	S	.	.	.	.	.					S	S								T	T	S	S								T	T		B		T	T
Template Predicted Secondary structure																																														.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.						.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.			.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure																							.	.
Query SS confidence																							.	.
Query Sequence		G	T	P	V	T	A	E	A	V	K	L	S	F	E	R	L	L	K	I	G	Q	.	.	G	P	A	E	A	F	P	K	D	L	K	I	D	A	P	D	E	H	T	V	K	F	T	L	S	Q	P	F	A	P	F	L	Y	T	L	A	N	D	G	A	S	I	I	N	P	A	V	L	K	E	H	A	A	D	D	A	R
Query Conservation																							.	.
Alig confidence																							.	.																																																									.
Template Conservation																																																																																	.
Template Sequence		G	T	D	F	N	A	A	A	V	K	A	N	L	D	R	A	S	D	P	A	N	H	L	K	R	H	N	L	Y	K	N	I	A	K	T	E	A	I	D	P	T	T	V	K	I	T	L	K	Q	P	F	S	A	F	I	N	I	L	A	H	P	A	T	A	X	I	S	P	A	A	L	E	K	Y	G	K	E	I	G	.
Template Known Secondary structure		S		B														T		G	G	G			T	T	G	G	G	T	T	T									T	T							S	S			T	T						T	S	T	T													G	G	G	T	T	.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.		.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure																																			.
Query SS confidence																																			.
Query Sequence		G	F	L	A	Q	N	T	A	G	S	G	P	F	M	L	K	S	W	Q	K	G	Q	Q	L	V	L	V	P	N	P	H	Y	P	.	G	N	K	P	N	F	K	R	V	S	V	K	I	I	G	E	S	A	S	R	R	L	Q	L	S	R	G	D	I	D	I	A	D	A	L	P	V	D	Q	L	N	A	L	K	Q	E
Query Conservation																																			.
Alig confidence		.	.	.	.																														.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	F	Y	P	V	G	T	G	P	Y	E	L	D	T	W	N	Q	T	D	F	V	K	V	K	K	F	A	G	Y	W	Q	P	G	L	P	K	L	D	S	I	T	W	R	P	V	A	D	N	N	T	R	A	A	X	L	Q	T	G	E	A	Q	F	A	F	P	I	P	Y	E	Q	A	T	L	L	E	K	N
Template Known Secondary structure		.	.	.	.	T	S				S	S	S								T	T	T								T	T		S	S	T	T					S																				T	S		S				S
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	K	V	N	V	A	E	Y	P	S	L	R	V	T	Y	L	Y	L	N	N	S	K	A	P	L	N	Q	A	D	L	R	R	A	I	S	W	S	T	D	Y	Q	G	M	V	N	G	I	L	S	G	N	G	K	Q	M	R	G	P	I	P	E	G	M	W	G	Y	D	A	T	A	M	Q	Y	N	H	D	E	T	K	A
Query Conservation
Alig confidence																																																																.
Template Conservation																																																																.
Template Sequence		K	N	I	E	L	X	A	S	P	S	I	X	Q	R	Y	I	S	X	N	V	T	Q	K	P	F	D	N	P	K	V	R	E	A	L	N	Y	A	I	N	R	P	A	L	V	K	V	A	F	A	G	Y	A	T	P	A	T	G	V	V	P	P	S	.	I	A	Y	A	Q	S	Y	K	P	W	P	Y	D	P	V	K	A
Template Known Secondary structure		T	T																		T	T	S	T	G	G	G	S																						T	T						S	S	S	S		T	T	.	S	B	T
Template Predicted Secondary structure																																																																.
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.		.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		345	.	.	.	.	350	.	.	.		.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.						.	.	.	.	.	.	410	.	.	.	.	.	.	.	.
Predicted Secondary structure											.																																																			.	.	.	.	.
Query SS confidence											.																																																			.	.	.	.	.
Query Sequence		K	A	E	W	D	K	V	T	S	.	K	P	T	S	L	T	F	L	Y	S	D	N	D	P	N	W	E	P	I	A	L	A	T	Q	S	S	L	N	K	L	G	I	I	V	K	L	E	K	L	A	N	A	T	M	R	D	R	V	G	K	.	.	.	.	.	G	D	Y	D	I	A	I	G	N	W	S	P	D	F	A
Query Conservation											.																																																			.	.	.	.	.
Alig confidence											.																																																			.	.	.	.	.
Template Conservation
Template Sequence		R	E	L	L	K	E	A	G	Y	P	N	G	F	S	T	T	L	W	S	S	H	N	H	S	T	A	Q	K	V	L	Q	F	T	Q	Q	Q	L	A	Q	V	G	I	K	A	Q	V	T	A	X	D	A	G	Q	R	A	A	E	V	E	G	K	G	Q	K	E	S	G	V	R	X	F	Y	T	G	W	S	A	S	T	G
Template Known Secondary structure									T		T	T												S	S	S															T	T																	T	T	S			T	T	T													T	T	S
Template Predicted Secondary structure
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
		419	420	.	.	.	.	.	.	.	.	.	430	.		.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.
Predicted Secondary structure															.
Query SS confidence															.
Query Sequence		D	P	Y	M	F	M	N	Y	W	F	E	S	D	.	K	K	G	L	P	G	N	R	S	F	Y	E	N	S	E	V	D	K	L	L	R	N	A	L	A	T	T	D	Q	T	Q	R	T	R	D	Y	Q	Q	A	Q	K	I	V	I	D	D	A	A	Y	V	Y	L	F	Q	K	N	Y	Q	L	A	M	N	K	E	V	K
Query Conservation															.
Alig confidence															.
Template Conservation
Template Sequence		E	A	D	W	A	L	S	P	L	F	A	S	Q	N	W	P	P	T	L	F	N	T	A	F	Y	S	N	K	Q	V	D	D	F	L	A	Q	A	L	K	T	N	D	P	A	E	K	T	R	L	Y	K	A	A	Q	D	I	I	W	Q	E	S	P	W	I	P	L	V	V	E	K	L	V	S	A	H	S	K	N	L	T
Template Known Secondary structure		B											G	G	G	T	T	T	T	S			T	T																T																																						T	T
Template Predicted Secondary structure
Template SS confidence
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.
		498	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	F	V	F	N	P	M	L	E	Q	V	F	N	I	N	T	M	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	F	W	I	X	P	D	T	G	F	S	F	E	D	A	D	L	Q
Template Known Secondary structure		S					T	T	S					T	T
Template Predicted Secondary structure
Template SS confidence
		472	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.