Job Description P76128 Confidence 100.00% Date Thu Jan 5 12:19:19 GMT 2012 Rank 6 Aligned Residues 484 % Identity 26% Template d1jeta_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.20

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	P	V	A	H	A	A	V	P	K	D	M	L	V	I	G	K	A	A	D	P	Q	T	L	D	P	A	V	T	I	D	N	N	D	W	T	V	T	Y	P	S	Y	Q	R	L	V	Q	Y	K	T	D	G	D	K	G	S	T	D	V	E	G	D	L	A	S	S	W	K	A	S	D	D	Q	K	E	W	T	F	T	L
Query Conservation
Alig confidence																																																						.	.	.	.	.												.
Template Conservation																																																						.	.	.	.	.												.
Template Sequence		V	P	A	G	V	Q	L	A	D	K	Q	T	L	V	R	N	N	G	S	E	V	Q	S	L	D	P	H	K	I	E	G	V	P	E	S	N	V	S	R	D	L	F	E	G	L	L	I	S	D	V	E	G	.	.	.	.	.	H	P	S	P	G	V	A	E	K	W	E	.	N	K	D	F	K	V	W	T	F	H	L
Template Known Secondary structure				T	T			B		S	S								S	S			S		S	S	T	T	S			S														S					T	T		.	.	.	.	.					S	S						.			T	T	T
Template Predicted Secondary structure																																																						.	.	.	.	.												.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.						.	.	.	.	.	60	.	.	.	.	.		.	.	.	.	70	.	.	.	.	.	.
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.																				.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	D	N	A	K	F	A	D	G	T	P	V	T	A	E	A	V	K	L	S	F	E	R	L	L	K	I	G	Q	G	P	A	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	F	P	K	D	L	K	I	D	A	P	D	E	H	T	V	K	F	T	L	S	Q	P	F	A	P	F	L
Query Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	E	N	A	K	W	S	D	G	T	P	V	T	A	H	D	F	V	Y	S	W	Q	R	L	A	D	P	N	T	A	S	P	Y	A	S	Y	L	Q	Y	G	H	I	A	N	I	D	D	I	I	A	G	K	K	P	A	T	D	L	G	V	K	A	L	D	D	H	T	F	E	V	T	L	S	E	P	V	P	Y	F	Y
Template Known Secondary structure			T	T		B		T	T	S		B																G	G	G			T	T	T	T					T	T	B	T	T						T	T	S	S		G	G	G	S	S						T	T						B	S	S			T	T
Template Predicted Secondary structure
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																													.
Query SS confidence																																																													.
Query Sequence		Y	T	L	A	N	D	G	A	S	I	I	N	P	A	V	L	K	E	H	A	A	D	D	A	R	G	F	L	A	Q	N	T	A	G	S	G	P	F	M	L	K	S	W	Q	K	G	Q	Q	L	V	L	V	P	N	P	H	Y	P	G	.	N	K	P	N	F	K	R	V	S	V	K	I	I	G	E	S	A	S	R	R
Query Conservation																																																													.
Alig confidence																							.	.	.																																				.
Template Conservation																							.	.	.
Template Sequence		K	L	L	V	H	P	S	V	S	P	V	P	K	S	A	V	E	K	F	G	D	.	.	.	K	W	T	Q	P	A	N	I	V	T	N	G	A	Y	K	L	K	N	W	V	V	N	E	R	I	V	L	E	R	N	P	Q	Y	W	D	N	A	K	T	V	I	N	Q	V	T	Y	L	P	I	S	S	E	V	T	D	V
Template Known Secondary structure				T	T	S	G	G	G	S											G	G	.	.	.	G	T	T	S	T	T	T					S	S								T	T	T								T	T	S	T	T	G	G	G
Template Predicted Secondary structure																							.	.	.
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.				.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.		.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure															.
Query SS confidence															.
Query Sequence		L	Q	L	S	R	G	D	I	D	I	A	D	A	.	L	P	V	D	Q	L	N	A	L	K	Q	E	N	K	V	N	V	A	E	Y	P	S	L	R	V	T	Y	L	Y	L	N	N	S	K	A	P	L	N	Q	A	D	L	R	R	A	I	S	W	S	T	D	Y	Q	G	M	V	N	G	I	L	S	G	N	G	K	Q
Query Conservation															.
Alig confidence															.
Template Conservation
Template Sequence		N	R	Y	R	S	G	E	I	D	M	T	Y	N	N	M	P	I	E	L	F	Q	K	L	K	K	E	I	P	N	E	V	R	V	D	P	Y	L	C	T	Y	Y	Y	E	I	N	N	Q	K	A	P	F	N	D	V	R	V	R	T	A	L	K	L	A	L	D	R	D	I	I	V	N	K	V	K	N	Q	G	D	L	P
Template Known Secondary structure						T	T	S		S	B			S				T	T	T								S	G	G	G																T	T	S	T	T	T	T	S											S								T	T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.						.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.				.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure																			.	.	.	.	.																			.	.	.
Query SS confidence																			.	.	.	.	.																			.	.	.
Query Sequence		M	R	G	P	I	P	E	G	M	W	G	Y	D	A	T	A	M	.	.	.	.	.	Q	Y	N	H	D	E	T	K	A	K	A	E	W	D	K	V	T	S	.	.	.	K	P	T	S	L	T	F	L	Y	S	D	N	D	P	N	W	E	P	I	A	L	A	T	Q	S	S	L	N	K	L	G	I	I	V	K	L	E
Query Conservation																			.	.	.	.	.																			.	.	.
Alig confidence																			.	.	.	.	.																			.	.	.
Template Conservation
Template Sequence		A	Y	S	Y	T	P	P	Y	T	D	G	A	K	L	V	E	P	E	W	F	K	W	S	Q	Q	K	R	N	E	E	A	K	K	L	L	A	E	A	G	F	T	A	D	K	P	L	T	F	D	L	L	Y	N	T	S	D	L	H	K	K	L	A	I	A	V	A	S	I	W	K	K	N	L	G	V	N	V	N	L	E
Template Known Secondary structure			S	S	S	S		T	T	S	T	T											S																T	T			S	S	S										S
Template Predicted Secondary structure
Template SS confidence
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
		391	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	A	N	A	T	M	R	D	R	V	G	K	G	D	Y	D	I	A	I	G	N	W	S	P	D	F	A	D	P	Y	M	F	M	N	Y	W	F	E	S	D	K	K	G	L	P	G	N	R	S	F	Y	E	N	S	E	V	D	K	L	L	R	N	A	L	A	T	T	D	Q	T	Q	R	T	R	D	Y	Q	Q	A
Query Conservation
Alig confidence																																									.	.	.	.
Template Conservation																																									.	.	.	.
Template Sequence		N	Q	E	W	K	T	F	L	D	T	R	H	Q	G	T	F	D	V	A	R	A	G	W	C	A	D	Y	N	E	P	T	S	F	L	N	T	M	L	S	.	.	.	.	D	S	S	N	N	T	A	H	Y	K	S	P	A	F	D	K	L	I	A	D	T	L	K	V	A	D	D	T	Q	R	S	E	L	Y	A	K	A
Template Known Secondary structure															T			S									S	S	S	S	T					G	G	G	S	T	.	.	.	.	T		T	T		T	T														T	T	T	S
Template Predicted Secondary structure																																									.	.	.	.
Template SS confidence
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.					.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.
		471	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.		.	.	.	.	.	.	.	510	.	.	.	.	.	.
Predicted Secondary structure																																		.
Query SS confidence																																		.
Query Sequence		Q	K	I	V	I	D	D	A	A	Y	V	Y	L	F	Q	K	N	Y	Q	L	A	M	N	K	E	V	K	G	F	V	F	N	.	P	M	L	E	Q	V	F	N	I	N	T	M	S	K
Query Conservation																																		.
Alig confidence																																		.
Template Conservation
Template Sequence		E	Q	Q	L	D	K	D	S	A	I	V	P	V	Y	Y	Y	V	N	A	R	L	V	K	P	W	V	G	G	Y	T	G	K	D	P	L	D	N	I	Y	V	K	N	L	Y	I	I	K
Template Known Secondary structure								T	T														B		T	T			S						T	T					G	G	G				B
Template Predicted Secondary structure
Template SS confidence
		470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.